Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MU414_RS22410 Genome accession   NZ_CP095137
Coordinates   4583996..4584532 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Iso00225     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4578996..4589532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU414_RS22390 soxR 4580725..4581189 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  MU414_RS22395 soxS 4581275..4581598 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  MU414_RS22400 pdeC 4581601..4583187 (-) 1587 WP_001545711.1 c-di-GMP phosphodiesterase PdeC -
  MU414_RS22405 yjcB 4583616..4583897 (+) 282 WP_001296643.1 YjcB family protein -
  MU414_RS22410 ssb 4583996..4584532 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MU414_RS22415 uvrA 4584787..4587609 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  MU414_RS22420 yjbR 4587644..4588000 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  MU414_RS22425 yjbQ 4588004..4588420 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MU414_RS22430 aphA 4588531..4589244 (-) 714 WP_001226933.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=582546 MU414_RS22410 WP_000168305.1 4583996..4584532(-) (ssb) [Escherichia coli strain Iso00225]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=582546 MU414_RS22410 WP_000168305.1 4583996..4584532(-) (ssb) [Escherichia coli strain Iso00225]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCCACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489