Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   KTE14_RS00285 Genome accession   NZ_CP077738
Coordinates   70692..72320 (-) Length   542 a.a.
NCBI ID   WP_001186604.1    Uniprot ID   Q8VUV3
Organism   Staphylococcus aureus strain UMCG578     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65692..77320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTE14_RS00255 (KTE14_00255) - 66033..67019 (+) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  KTE14_RS00260 (KTE14_00260) - 67009..67251 (+) 243 Protein_49 type I restriction enzyme endonuclease domain-containing protein -
  KTE14_RS00265 (KTE14_00265) - 67242..68852 (-) 1611 Protein_50 IS1182 family transposase -
  KTE14_RS00270 (KTE14_00270) - 68901..69407 (-) 507 WP_001092189.1 DUF1643 domain-containing protein -
  KTE14_RS00275 (KTE14_00275) - 69422..69733 (-) 312 WP_000700851.1 DUF960 family protein -
  KTE14_RS00280 (KTE14_00280) - 69820..70170 (-) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  KTE14_RS00285 (KTE14_00285) ccrB 70692..72320 (-) 1629 WP_001186604.1 cassette chromosome recombinase CcrB Machinery gene
  KTE14_RS00290 (KTE14_00290) ccrA 72342..73691 (-) 1350 WP_000815652.1 cassette chromosome recombinase CcrA Machinery gene
  KTE14_RS00295 (KTE14_00295) cch1 73925..75712 (-) 1788 WP_000122621.1 cassette chromosome replicative helicase -
  KTE14_RS00300 (KTE14_00300) ssb 75712..76002 (-) 291 WP_001036437.1 cassette chromosome ssDNA-binding protein -
  KTE14_RS00305 (KTE14_00305) - 76141..77190 (+) 1050 WP_000613248.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62650.85 Da        Isoelectric Point: 9.9805

>NTDB_id=582547 KTE14_RS00285 WP_001186604.1 70692..72320(-) (ccrB) [Staphylococcus aureus strain UMCG578]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
IYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVARVNQENKVDGAALHHDIAYKQQQYD
EVQTKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKSLFDAKQISKLLQHIFQDIKHMEKSRLK
ALYLSVIDRINIRKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=582547 KTE14_RS00285 WP_001186604.1 70692..72320(-) (ccrB) [Staphylococcus aureus strain UMCG578]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGATCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATAGATTGTGTTATG
ATCTACAAAACAAACCGATTAGCTCGTAATACATCGGATCTTCTGAAAATCGTCGAAGATTTGCATAAACAAAATGTCGA
ATTTTTCAGTTTATCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTTATGGGGCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACATGAAGCTAATATTGTAAAATA
TATATTCGAGTCCTATGCCAAAGGACATGGCTATCGTAAAATAGCCAATGCATTGAATCACAAAGGCTATGTCACTAAAA
AGGGTAAACCTTTTAGTATTAGTTCTATCACATATATATTAGCTAACCCATTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAAAAACAAGTCAGTCAAAAACCCCAAGTTCATGGTAAAGGAACGA
ATCTGCTTACAGGCATTATCCATTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACAACGAATACACTTAAAGAT
GGGACCAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTAATGAAGCAAATACTCGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTTG
TAGCACGTGTTAATCAAGAAAATAAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAACCAAACTAAATAACTTGATTAAAACCATAGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGTCTT
TATTTGATGCCAAACAAATCAGTAAACTATTACAACACATCTTTCAAGATATTAAGCACATGGAAAAATCTCGACTCAAA
GCATTGTACCTATCAGTGATTGATCGTATTAATATTAGAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

97.417

100

0.974