Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | KSF84_RS01680 | Genome accession | NZ_CP077723 |
| Coordinates | 332520..332954 (-) | Length | 144 a.a. |
| NCBI ID | WP_135961506.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain PMWSG-4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 284996..335869 | 332520..332954 | within | 0 |
Gene organization within MGE regions
Location: 284996..335869
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KSF84_RS01390 (KSF84_01390) | mobH | 285334..287268 (-) | 1935 | WP_135961545.1 | MobH family relaxase | - |
| KSF84_RS01395 (KSF84_01395) | - | 287366..287953 (-) | 588 | WP_135961544.1 | recombinase family protein | - |
| KSF84_RS01400 (KSF84_01400) | - | 288209..288355 (+) | 147 | WP_168341803.1 | hypothetical protein | - |
| KSF84_RS01405 (KSF84_01405) | - | 288359..288631 (-) | 273 | WP_135961543.1 | hypothetical protein | - |
| KSF84_RS11500 | - | 288738..288872 (-) | 135 | WP_267912080.1 | hypothetical protein | - |
| KSF84_RS11540 (KSF84_01410) | - | 289458..289673 (+) | 216 | WP_024434389.1 | phosphoglucosamine mutase | - |
| KSF84_RS01415 (KSF84_01415) | - | 289693..290100 (+) | 408 | WP_219848224.1 | mobilization domain protein | - |
| KSF84_RS01420 (KSF84_01420) | - | 290335..290556 (-) | 222 | WP_001251694.1 | hypothetical protein | - |
| KSF84_RS01425 (KSF84_01425) | - | 290547..290750 (-) | 204 | WP_000131876.1 | hypothetical protein | - |
| KSF84_RS01430 (KSF84_01430) | sul2 | 291087..291902 (+) | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| KSF84_RS01435 (KSF84_01435) | - | 292266..293237 (-) | 972 | WP_135961541.1 | ArdC family protein | - |
| KSF84_RS01440 (KSF84_01440) | - | 293319..294203 (-) | 885 | WP_135961540.1 | hypothetical protein | - |
| KSF84_RS01445 (KSF84_01445) | - | 294280..294462 (-) | 183 | WP_233784708.1 | hypothetical protein | - |
| KSF84_RS01450 (KSF84_01450) | - | 294610..294963 (-) | 354 | WP_135961538.1 | hypothetical protein | - |
| KSF84_RS01455 (KSF84_01455) | - | 295354..295806 (+) | 453 | WP_135961537.1 | TIGR03757 family integrating conjugative element protein | - |
| KSF84_RS01460 (KSF84_01460) | - | 295806..296744 (+) | 939 | WP_135961536.1 | TIGR03756 family integrating conjugative element protein | - |
| KSF84_RS01465 (KSF84_01465) | - | 296760..298760 (+) | 2001 | WP_217883985.1 | integrating conjugative element protein | - |
| KSF84_RS01470 (KSF84_01470) | - | 298783..299196 (+) | 414 | WP_135961535.1 | hypothetical protein | - |
| KSF84_RS01475 (KSF84_01475) | - | 299349..299717 (+) | 369 | WP_135961534.1 | hypothetical protein | - |
| KSF84_RS01480 (KSF84_01480) | - | 299752..301263 (-) | 1512 | WP_135961533.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| KSF84_RS01485 (KSF84_01485) | - | 301281..301607 (-) | 327 | WP_135961532.1 | hypothetical protein | - |
| KSF84_RS01490 (KSF84_01490) | - | 301594..302034 (-) | 441 | WP_135961531.1 | hypothetical protein | - |
| KSF84_RS01495 (KSF84_01495) | - | 302031..304760 (-) | 2730 | WP_411828819.1 | conjugative transfer ATPase | - |
| KSF84_RS01500 (KSF84_01500) | - | 304835..305230 (-) | 396 | WP_135961529.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| KSF84_RS01505 (KSF84_01505) | - | 305241..306680 (-) | 1440 | WP_135961528.1 | TIGR03752 family integrating conjugative element protein | - |
| KSF84_RS01510 (KSF84_01510) | - | 306689..307579 (-) | 891 | WP_135961527.1 | TIGR03749 family integrating conjugative element protein | - |
| KSF84_RS01515 (KSF84_01515) | - | 307579..308220 (-) | 642 | WP_135961526.1 | PFL_4703 family integrating conjugative element protein | - |
| KSF84_RS01520 (KSF84_01520) | - | 308217..308588 (-) | 372 | WP_135961525.1 | TIGR03750 family conjugal transfer protein | - |
| KSF84_RS01525 (KSF84_01525) | - | 308618..309037 (-) | 420 | WP_135961524.1 | DUF2976 domain-containing protein | - |
| KSF84_RS01530 (KSF84_01530) | - | 309058..309309 (-) | 252 | WP_135961523.1 | DUF3262 family protein | - |
| KSF84_RS01535 (KSF84_01535) | - | 309309..309635 (-) | 327 | WP_217883987.1 | RAQPRD family integrative conjugative element protein | - |
| KSF84_RS01540 (KSF84_01540) | - | 309835..310167 (+) | 333 | WP_135961521.1 | hypothetical protein | - |
| KSF84_RS01545 (KSF84_01545) | - | 310223..310924 (-) | 702 | WP_135961520.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| KSF84_RS01550 (KSF84_01550) | - | 310921..311274 (-) | 354 | WP_135961519.1 | hemophilus-specific protein | - |
| KSF84_RS01555 (KSF84_01555) | traD | 311261..313477 (-) | 2217 | WP_135961518.1 | type IV conjugative transfer system coupling protein TraD | - |
| KSF84_RS01560 (KSF84_01560) | - | 313477..313980 (-) | 504 | WP_135961517.1 | integrating conjugative element protein | - |
| KSF84_RS01565 (KSF84_01565) | - | 313992..314792 (-) | 801 | WP_411828817.1 | hypothetical protein | - |
| KSF84_RS01570 (KSF84_01570) | - | 314771..315505 (-) | 735 | WP_217883988.1 | TIGR03759 family integrating conjugative element protein | - |
| KSF84_RS01575 (KSF84_01575) | - | 315505..316143 (-) | 639 | WP_135961515.1 | hypothetical protein | - |
| KSF84_RS01580 (KSF84_01580) | - | 316396..317628 (-) | 1233 | Protein_293 | Tn3-like element Tn3 family transposase | - |
| KSF84_RS01585 (KSF84_01585) | - | 317693..318397 (+) | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| KSF84_RS01590 (KSF84_01590) | bleO | 318591..318977 (+) | 387 | WP_063102497.1 | bleomycin binding protein | - |
| KSF84_RS01595 (KSF84_01595) | - | 319297..319689 (-) | 393 | WP_000084744.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| KSF84_RS01600 (KSF84_01600) | - | 319925..320629 (-) | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| KSF84_RS01605 (KSF84_01605) | - | 320815..321135 (+) | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase family protein | - |
| KSF84_RS01610 (KSF84_01610) | - | 321128..321514 (+) | 387 | WP_135961514.1 | amino acid-binding protein | - |
| KSF84_RS01615 (KSF84_01615) | - | 321522..322208 (+) | 687 | WP_001284954.1 | ArsR/SmtB family transcription factor | - |
| KSF84_RS01620 (KSF84_01620) | tetR(B) | 322186..322809 (-) | 624 | WP_000088605.1 | tetracycline resistance transcriptional repressor TetR(B) | - |
| KSF84_RS01625 (KSF84_01625) | tet(B) | 322891..324096 (+) | 1206 | WP_001089068.1 | tetracycline efflux MFS transporter Tet(B) | - |
| KSF84_RS01630 (KSF84_01630) | tetC | 324209..324802 (-) | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| KSF84_RS01635 (KSF84_01635) | - | 324890..325306 (+) | 417 | WP_000275180.1 | helix-turn-helix domain-containing protein | - |
| KSF84_RS01640 (KSF84_01640) | - | 325316..326524 (-) | 1209 | WP_006250222.1 | IS4-like element ISVsa5 family transposase | - |
| KSF84_RS01645 (KSF84_01645) | - | 326464..326982 (-) | 519 | WP_135961513.1 | DUF3560 domain-containing protein | - |
| KSF84_RS01650 (KSF84_01650) | - | 327066..327395 (-) | 330 | WP_135961512.1 | hypothetical protein | - |
| KSF84_RS01655 (KSF84_01655) | - | 327505..327954 (-) | 450 | WP_135961511.1 | STY4534 family ICE replication protein | - |
| KSF84_RS01660 (KSF84_01660) | - | 328767..330803 (-) | 2037 | WP_135961510.1 | DNA topoisomerase III | - |
| KSF84_RS01665 (KSF84_01665) | - | 330961..331455 (-) | 495 | WP_135961509.1 | hemophilus-specific protein | - |
| KSF84_RS01670 (KSF84_01670) | - | 331550..332197 (+) | 648 | WP_135961508.1 | plasmid fertility inhibition factor family protein | - |
| KSF84_RS01675 (KSF84_01675) | - | 332148..332447 (-) | 300 | WP_135961507.1 | hypothetical protein | - |
| KSF84_RS01680 (KSF84_01680) | ssb | 332520..332954 (-) | 435 | WP_135961506.1 | single-stranded DNA-binding protein | Machinery gene |
| KSF84_RS01685 (KSF84_01685) | - | 333204..333671 (-) | 468 | WP_135961505.1 | DUF3158 family protein | - |
| KSF84_RS01690 (KSF84_01690) | - | 333680..334438 (-) | 759 | WP_135961504.1 | PFL_4669 family integrating conjugative element protein | - |
| KSF84_RS01695 (KSF84_01695) | - | 334628..335830 (-) | 1203 | WP_135961503.1 | STY4528 family pathogenicity island replication protein | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16341.19 Da Isoelectric Point: 6.2357
>NTDB_id=582502 KSF84_RS01680 WP_135961506.1 332520..332954(-) (ssb) [Pasteurella multocida strain PMWSG-4]
MAGINKVIIVGHLGNEPELRTMPNGEVIANISVATSESWTDKTTGERREVTEWHRIVFYRRQAEVVGQYLHKGSQIYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLGGRNNGTYPAPTQNQPANVSNQMEPPINNFDGDIPF
MAGINKVIIVGHLGNEPELRTMPNGEVIANISVATSESWTDKTTGERREVTEWHRIVFYRRQAEVVGQYLHKGSQIYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLGGRNNGTYPAPTQNQPANVSNQMEPPINNFDGDIPF
Nucleotide
Download Length: 435 bp
>NTDB_id=582502 KSF84_RS01680 WP_135961506.1 332520..332954(-) (ssb) [Pasteurella multocida strain PMWSG-4]
ATGGCAGGCATCAATAAAGTCATTATTGTCGGGCATCTTGGTAATGAACCTGAATTGCGTACTATGCCAAATGGCGAAGT
AATTGCAAATATCAGTGTTGCAACAAGTGAAAGCTGGACGGATAAAACAACAGGAGAACGTCGTGAAGTAACTGAATGGC
ACCGCATTGTGTTTTATCGTCGTCAAGCTGAAGTGGTCGGTCAGTACCTTCATAAAGGTTCACAGATTTATGTAGAAGGT
CGTTTACGTACCCGCAAATGGCAAGATCAAAATGGTCAAGACCGTTATACCACGGAAATTCAAGGCGATGTATTACAAAT
GTTAGGTGGGCGTAATAATGGAACATACCCTGCTCCAACACAAAATCAACCTGCTAATGTATCGAATCAAATGGAGCCTC
CGATAAATAACTTTGATGGCGACATTCCGTTCTGA
ATGGCAGGCATCAATAAAGTCATTATTGTCGGGCATCTTGGTAATGAACCTGAATTGCGTACTATGCCAAATGGCGAAGT
AATTGCAAATATCAGTGTTGCAACAAGTGAAAGCTGGACGGATAAAACAACAGGAGAACGTCGTGAAGTAACTGAATGGC
ACCGCATTGTGTTTTATCGTCGTCAAGCTGAAGTGGTCGGTCAGTACCTTCATAAAGGTTCACAGATTTATGTAGAAGGT
CGTTTACGTACCCGCAAATGGCAAGATCAAAATGGTCAAGACCGTTATACCACGGAAATTCAAGGCGATGTATTACAAAT
GTTAGGTGGGCGTAATAATGGAACATACCCTGCTCCAACACAAAATCAACCTGCTAATGTATCGAATCAAATGGAGCCTC
CGATAAATAACTTTGATGGCGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
58.152 |
100 |
0.743 |
| ssb | Vibrio cholerae strain A1552 |
50.575 |
100 |
0.611 |
| ssb | Neisseria gonorrhoeae MS11 |
41.04 |
100 |
0.493 |
| ssb | Neisseria meningitidis MC58 |
41.04 |
100 |
0.493 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
30.233 |
100 |
0.361 |