Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KQ937_RS14155 Genome accession   NZ_CP077686
Coordinates   3029005..3030537 (-) Length   510 a.a.
NCBI ID   WP_106223518.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd0906     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3024005..3035537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ937_RS14130 (KQ937_14080) - 3025043..3025216 (+) 174 WP_005302173.1 hypothetical protein -
  KQ937_RS14135 (KQ937_14085) - 3025392..3025658 (+) 267 WP_005302176.1 YihD family protein -
  KQ937_RS14140 (KQ937_14090) ccoG 3025847..3027184 (+) 1338 WP_370466044.1 cytochrome c oxidase accessory protein CcoG -
  KQ937_RS14145 (KQ937_14095) - 3027227..3028216 (+) 990 WP_005302181.1 serine/threonine protein kinase -
  KQ937_RS14150 (KQ937_14100) - 3028306..3028905 (+) 600 WP_370466075.1 thiol:disulfide interchange protein DsbA/DsbL -
  KQ937_RS14155 (KQ937_14105) comM 3029005..3030537 (-) 1533 WP_106223518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KQ937_RS14160 (KQ937_14110) ilvG 3031077..3032723 (+) 1647 WP_284669153.1 acetolactate synthase 2 catalytic subunit -
  KQ937_RS14165 (KQ937_14115) ilvM 3032726..3032983 (+) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  KQ937_RS14170 (KQ937_14120) - 3033023..3033952 (+) 930 WP_284669154.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55106.43 Da        Isoelectric Point: 8.2787

>NTDB_id=582289 KQ937_RS14155 WP_106223518.1 3029005..3030537(-) (comM) [Photobacterium damselae strain Pdd0906]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDLRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=582289 KQ937_RS14155 WP_106223518.1 3029005..3030537(-) (comM) [Photobacterium damselae strain Pdd0906]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTCACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTAGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCTCCCGCTGATTTGCCTAAAGAAGGGGGGCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCTGCTTCAGGACAAATACCCGCAGAATCACTGCATAAATACGAATTTTT
AGGGGAGTTGGCTTTATCAGGGCAATTGCGTCCGGTAAAGGGGGCACTGCCTGCTGCTCTTGCTGCATTAAAGGCAAAAA
GGTGTTTGATTGTCCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGTGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCCCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGCGCATTGGAAATTGCAGCTGCTGGTG
GTCATAATCTTCTATTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGGTTATGTGATTTATTACCTCCC
ATGAGCCACGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGTGCACCTCATCATTCAAGTTCTATGGCTGCCTTAGTTGGAGGGGGTTCAATTCCAAGGCCAGGAGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCTGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AACTCTCTGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCTGCTCTGCCTAAAGGTACTTTAGCTCAAGGT
GGCGAGCGCGGTGAGAGCACTCCTGTGATTAAAGCGCGAGTTAATCAGGCGCGAACCTTAATGGATCTGCGAGCAGGAAA
AGTGAATGCTCGACTCTCTACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCACCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCATTAGGATATCGAGCAATGGATCGGTTATTGAAGCAGTTAACGGC
TCAAGCGATATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.863

100

0.769
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427