Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KP003_RS19125 Genome accession   NZ_CP077684
Coordinates   4315882..4316322 (+) Length   146 a.a.
NCBI ID   WP_216500083.1    Uniprot ID   -
Organism   Geomonas nitrogeniifigens strain RF4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4310882..4321322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP003_RS19105 (KP003_19105) - 4312700..4314376 (-) 1677 WP_216500079.1 ribonuclease J -
  KP003_RS19110 (KP003_19110) - 4314458..4314853 (-) 396 WP_216500080.1 hypothetical protein -
  KP003_RS19115 (KP003_19115) - 4314883..4315065 (-) 183 WP_217300144.1 hypothetical protein -
  KP003_RS19120 (KP003_19120) - 4315068..4315763 (-) 696 WP_216500082.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  KP003_RS19125 (KP003_19125) ssb 4315882..4316322 (+) 441 WP_216500083.1 single-stranded DNA-binding protein Machinery gene
  KP003_RS19130 (KP003_19130) - 4316688..4317971 (+) 1284 WP_217300145.1 site-specific integrase -
  KP003_RS19135 (KP003_19135) - 4318081..4319511 (+) 1431 WP_275423214.1 site-specific integrase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16191.04 Da        Isoelectric Point: 5.3193

>NTDB_id=582207 KP003_RS19125 WP_216500083.1 4315882..4316322(+) (ssb) [Geomonas nitrogeniifigens strain RF4]
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSLATTDRIKGKDGNWEDKTEWHNITLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWTDKDGKDRYTTEIVGEKMQMLSAKGEGGGQRQGGGRPQQDYNQGGGYEEPVFNPDDEIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=582207 KP003_RS19125 WP_216500083.1 4315882..4316322(+) (ssb) [Geomonas nitrogeniifigens strain RF4]
ATGGCAAGTCTCAACAAGGTGATGCTCATAGGCAACCTGGGCAAAGACCCCGAGGTGCGCTACACCGCCGGCGGTACCGC
CGTAGCTTCCTTCTCCCTGGCCACCACCGACCGGATCAAGGGCAAGGACGGCAACTGGGAAGACAAGACCGAATGGCACA
ACATCACCCTCTGGGCGCGTCTTGCCGAGATCGCCGGCGAGTACCTCTCCAAGGGGAAGACCGTATATATCGAGGGACGT
CTGCAGACCCGCAAGTGGACCGACAAGGACGGCAAGGACCGCTACACCACCGAGATCGTAGGTGAGAAGATGCAGATGCT
CTCCGCCAAGGGTGAAGGCGGCGGCCAGCGCCAGGGTGGCGGCAGGCCCCAGCAGGACTACAACCAGGGGGGCGGTTACG
AGGAGCCGGTCTTCAACCCGGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.458

100

0.575
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.527
  ssb Neisseria meningitidis MC58

49.231

89.041

0.438
  ssb Neisseria gonorrhoeae MS11

53.097

77.397

0.411
  ssbA Bacillus subtilis subsp. subtilis str. 168

32.37

100

0.384