Detailed information NTG0058191

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: D8S83_RS08925
• Genome accession: NZ_AP018349
• Coordinates: 1791082..1792086 (-)
• Length: 334 a.a.
• NCBI ID: WP_001005767.1
• Uniprot ID: Q6GG63
• Organism: Staphylococcus aureus strain GN1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1786082..1797086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D8S83_RS08910	yajC	1788614..1788874 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
D8S83_RS08915	tgt	1788893..1790032 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
D8S83_RS08920	queA	1790055..1791080 (-)	1026	WP_020977315.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
D8S83_RS08925	ruvB	1791082..1792086 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
D8S83_RS08930	ruvA	1792118..1792720 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
D8S83_RS08935	-	1792734..1793189 (-)	456	WP_000368902.1	ACT domain-containing protein	-
D8S83_RS08940	obgE	1793202..1794494 (-)	1293	WP_000496098.1	GTPase ObgE	-
D8S83_RS08945	rpmA	1794979..1795263 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
D8S83_RS08950	-	1795275..1795595 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
D8S83_RS08955	rplU	1795601..1795909 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
D8S83_RS08960	mreD	1796397..1796927 (-)	531	WP_020977316.1	rod shape-determining protein MreD	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37718.00 Da
• Isoelectric Point: 5.0865

>NTDB_id=58191 D8S83_RS08925 WP_001005767.1 1791082..1792086(-) (ruvB) [Staphylococcus aureus strain GN1]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDTIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=58191 D8S83_RS08925 WP_001005767.1 1791082..1792086(-) (ruvB) [Staphylococcus aureus strain GN1]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTTGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATCATTGCCAATGAAATGGAAGTTAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGGCTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGAATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACG
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTTGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCAAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATACGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

3D structure

• AlphaFold DB: Q6GG63

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.951	97.605	0.644
ruvB	Streptococcus pneumoniae TIGR4	58.182	98.802	0.575
ruvB	Streptococcus pneumoniae R6	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae D39	57.879	98.802	0.572
ruvB	Helicobacter pylori 26695	56.481	97.006	0.548
ruvB	Synechocystis sp. PCC 6803	53.75	95.808	0.515