Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   D8S83_RS08930 Genome accession   NZ_AP018349
Coordinates   1792118..1792720 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain GN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1787118..1797720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS08910 yajC 1788614..1788874 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  D8S83_RS08915 tgt 1788893..1790032 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  D8S83_RS08920 queA 1790055..1791080 (-) 1026 WP_020977315.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  D8S83_RS08925 ruvB 1791082..1792086 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  D8S83_RS08930 ruvA 1792118..1792720 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  D8S83_RS08935 - 1792734..1793189 (-) 456 WP_000368902.1 ACT domain-containing protein -
  D8S83_RS08940 obgE 1793202..1794494 (-) 1293 WP_000496098.1 GTPase ObgE -
  D8S83_RS08945 rpmA 1794979..1795263 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  D8S83_RS08950 - 1795275..1795595 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  D8S83_RS08955 rplU 1795601..1795909 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  D8S83_RS08960 mreD 1796397..1796927 (-) 531 WP_020977316.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=58192 D8S83_RS08930 WP_000271547.1 1792118..1792720(-) (ruvA) [Staphylococcus aureus strain GN1]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=58192 D8S83_RS08930 WP_000271547.1 1792118..1792720(-) (ruvA) [Staphylococcus aureus strain GN1]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTACAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment