Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   JGX27_RS02620 Genome accession   NZ_CP077423
Coordinates   480939..481601 (+) Length   220 a.a.
NCBI ID   WP_009853576.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 475939..486601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS02595 (JGX27_02595) - 476055..477455 (+) 1401 WP_009853572.1 Cof-type HAD-IIB family hydrolase -
  JGX27_RS02600 (JGX27_02600) - 477455..477811 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  JGX27_RS02605 (JGX27_02605) cysK 477925..478854 (-) 930 WP_009853573.1 cysteine synthase A -
  JGX27_RS02610 (JGX27_02610) - 478958..479584 (-) 627 WP_009853574.1 YigZ family protein -
  JGX27_RS02615 (JGX27_02615) comFA/cflA 479641..480942 (+) 1302 WP_009853575.1 DEAD/DEAH box helicase Machinery gene
  JGX27_RS02620 (JGX27_02620) comFC/cflB 480939..481601 (+) 663 WP_009853576.1 ComF family protein Machinery gene
  JGX27_RS02625 (JGX27_02625) raiA 481677..482225 (+) 549 WP_003063557.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25632.68 Da        Isoelectric Point: 9.1649

>NTDB_id=581499 JGX27_RS02620 WP_009853576.1 480939..481601(+) (comFC/cflB) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVYCPNCCRNGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKELKQALKKYKNYTFVPVPISPKRLKERQFNQVTALLQAAKISYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYENGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=581499 JGX27_RS02620 WP_009853576.1 480939..481601(+) (comFC/cflB) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTCATCTTAATGAAGAAAGATGACAA
CGGCGTTTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTTATTGCCCTAACTGCTGCCGAAATGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCATGGGAAAAACAACATCATCACGTCTCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATCCTTTTAAGTCACGTTTTTTCAAAAGAACTCAAACA
AGCATTAAAAAAATATAAAAATTACACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCGCTTTTACAAGCAGCTAAAATCTCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATTGATGATATTTACACAACTGGCGCCACTTTAAAAGGAATATATCAACTTTTCTATGAAAATGGCGCAAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

51.818

100

0.518
  comFC/cflB Streptococcus pneumoniae TIGR4

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae Rx1

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae D39

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae R6

51.364

100

0.514
  comFC/cflB Streptococcus mitis SK321

50.909

100

0.509