Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   JGX27_RS02615 Genome accession   NZ_CP077423
Coordinates   479641..480942 (+) Length   433 a.a.
NCBI ID   WP_009853575.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 474641..485942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS02590 (JGX27_02590) - 475292..475936 (+) 645 WP_009853571.1 response regulator transcription factor -
  JGX27_RS02595 (JGX27_02595) - 476055..477455 (+) 1401 WP_009853572.1 Cof-type HAD-IIB family hydrolase -
  JGX27_RS02600 (JGX27_02600) - 477455..477811 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  JGX27_RS02605 (JGX27_02605) cysK 477925..478854 (-) 930 WP_009853573.1 cysteine synthase A -
  JGX27_RS02610 (JGX27_02610) - 478958..479584 (-) 627 WP_009853574.1 YigZ family protein -
  JGX27_RS02615 (JGX27_02615) comFA/cflA 479641..480942 (+) 1302 WP_009853575.1 DEAD/DEAH box helicase Machinery gene
  JGX27_RS02620 (JGX27_02620) comFC/cflB 480939..481601 (+) 663 WP_009853576.1 ComF family protein Machinery gene
  JGX27_RS02625 (JGX27_02625) raiA 481677..482225 (+) 549 WP_003063557.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49072.28 Da        Isoelectric Point: 9.9437

>NTDB_id=581498 JGX27_RS02615 WP_009853575.1 479641..480942(+) (comFA/cflA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MDKLDNYYGRLFTQAQLSDALKKQAKQLPAMTKLNHHYVCNRCGSQVSLQNKLQTNVFYCRNCLVFGRNTSNGHLYYFPQ
KRFSKKASLIWKGKLTPYQDDVSKGMLEGIDAKKDLLIHAVTGAGKTEMIYQSVSKIIDDGGCVCLASPRIDVCLELYKR
LSRDFSCPITLLHGDSEPYKRAPLIIATTHQLLKFYQAFDLLIIDEVDAFPFVDNAVLYHAVDKAIKPNGTKIFLTATST
DELDKKVKTGTLTKLHLARRFHANPLVVPQKIWLSGVLSNMQKKKIPQKLINLLKKQRQTCYPLLIFFPNIEQGEAFTQI
LQTYFPEEQIAFVSSKTENRLEIVEKFRKQELSILVTTTILERGVTFPCVDVFVVLANHRLYTKSALVQISGRVGRAAER
PTGELLFLHDGSTKEMRKAIAEIKAMNKKGGFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=581498 JGX27_RS02615 WP_009853575.1 479641..480942(+) (comFA/cflA) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGGATAAACTGGATAATTATTATGGAAGACTATTTACACAAGCTCAACTTTCGGATGCCTTAAAAAAGCAGGCTAAACA
GTTGCCAGCAATGACAAAATTAAATCATCATTATGTTTGCAATCGTTGTGGTAGTCAAGTGTCTTTACAAAATAAACTTC
AAACAAACGTTTTTTATTGTCGAAATTGCCTTGTTTTTGGAAGAAATACGAGTAATGGACATCTCTATTATTTTCCACAA
AAACGTTTTTCTAAAAAAGCTTCTCTTATTTGGAAAGGAAAATTGACTCCTTACCAAGATGACGTTTCAAAAGGGATGTT
AGAAGGCATTGATGCTAAGAAAGACCTACTTATTCATGCTGTTACAGGTGCTGGAAAAACAGAAATGATTTACCAATCTG
TATCCAAAATAATTGATGACGGTGGTTGTGTTTGCCTGGCAAGTCCGCGAATTGATGTTTGTCTGGAGCTTTATAAACGC
TTGTCGCGTGATTTTTCGTGTCCGATTACATTGCTTCATGGAGATTCTGAGCCCTACAAACGTGCCCCTTTAATCATTGC
CACAACACATCAACTTTTAAAATTTTACCAAGCTTTTGATTTGTTAATTATTGATGAAGTTGATGCCTTTCCATTTGTGG
ATAATGCTGTGCTTTACCATGCTGTTGATAAAGCTATCAAACCTAATGGAACCAAGATTTTTTTAACAGCGACATCAACA
GATGAATTAGATAAAAAAGTAAAAACAGGAACTCTGACCAAATTGCACCTTGCTCGACGCTTTCATGCCAATCCATTAGT
TGTGCCACAAAAAATCTGGTTGTCTGGCGTTTTATCCAATATGCAAAAGAAGAAAATTCCCCAGAAATTAATAAATCTTC
TAAAAAAACAACGTCAAACCTGCTATCCTTTGCTAATTTTCTTCCCAAATATCGAACAAGGAGAAGCCTTTACTCAAATT
TTACAAACTTACTTTCCAGAAGAACAAATCGCTTTTGTGTCTAGTAAAACAGAAAATCGCTTAGAAATTGTAGAAAAATT
TAGGAAACAAGAACTTTCTATTTTGGTAACAACAACCATTTTAGAACGTGGCGTCACTTTCCCATGCGTAGATGTTTTTG
TAGTGCTTGCCAATCATAGATTATACACCAAAAGCGCGCTAGTTCAGATTTCAGGGCGAGTTGGGAGAGCAGCAGAGCGT
CCAACAGGAGAACTGTTATTCTTGCATGACGGTAGCACTAAAGAAATGAGAAAAGCTATTGCTGAAATTAAAGCGATGAA
TAAAAAAGGAGGATTTGCATGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(96-244)

Helicase conserved C-terminal domain (Helicase_C)

(287-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

60.187

98.614

0.594
  comFA/cflA Streptococcus pneumoniae Rx1

60.187

98.614

0.594
  comFA/cflA Streptococcus pneumoniae D39

60.187

98.614

0.594
  comFA/cflA Streptococcus pneumoniae R6

60.187

98.614

0.594
  comFA/cflA Streptococcus mitis NCTC 12261

59.953

98.614

0.591
  comFA/cflA Streptococcus mitis SK321

59.251

98.614

0.584
  comFA Lactococcus lactis subsp. cremoris KW2

50.98

94.226

0.48
  comFA Latilactobacillus sakei subsp. sakei 23K

38.391

100

0.386