Detailed information NTG0581482

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: JGX27_RS00705
• Genome accession: NZ_CP077423
• Coordinates: 107622..108089 (+)
• Length: 155 a.a.
• NCBI ID: WP_012961330.1
• Uniprot ID: A0AA94M0F9
• Organism: Streptococcus gallolyticus subsp. gallolyticus TX20005
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 102622..113089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGX27_RS00675 (JGX27_00675)	-	104366..104734 (+)	369	WP_009853228.1	DUF1033 family protein	-
JGX27_RS00680 (JGX27_00680)	comYA	104805..105746 (+)	942	WP_009853229.1	competence type IV pilus ATPase ComGA	Machinery gene
JGX27_RS00685 (JGX27_00685)	comYB	105628..106713 (+)	1086	WP_012961328.1	competence type IV pilus assembly protein ComGB	Machinery gene
JGX27_RS00690 (JGX27_00690)	comYC	106713..107006 (+)	294	WP_009853231.1	competence type IV pilus major pilin ComGC	Machinery gene
JGX27_RS00695 (JGX27_00695)	comYD	106990..107421 (+)	432	WP_009853232.1	competence type IV pilus minor pilin ComGD	Machinery gene
JGX27_RS00700 (JGX27_00700)	comGE	107375..107668 (+)	294	WP_012961329.1	competence type IV pilus minor pilin ComGE	-
JGX27_RS00705 (JGX27_00705)	comYF	107622..108089 (+)	468	WP_012961330.1	competence type IV pilus minor pilin ComGF	Machinery gene
JGX27_RS00710 (JGX27_00710)	comYG	108061..108375 (+)	315	WP_009853235.1	competence type IV pilus minor pilin ComGG	Machinery gene
JGX27_RS00715 (JGX27_00715)	comYH	108448..109404 (+)	957	WP_009853236.1	class I SAM-dependent methyltransferase	Machinery gene
JGX27_RS00720 (JGX27_00720)	-	109457..110656 (+)	1200	WP_009853237.1	acetate kinase	-
JGX27_RS00725 (JGX27_00725)	-	110818..111018 (+)	201	WP_012961332.1	helix-turn-helix transcriptional regulator	-
JGX27_RS00730 (JGX27_00730)	-	111028..111237 (+)	210	WP_009853239.1	hypothetical protein	-
JGX27_RS00735 (JGX27_00735)	-	111250..111702 (+)	453	WP_009853240.1	hypothetical protein	-
JGX27_RS00740 (JGX27_00740)	-	111714..112352 (+)	639	WP_009853241.1	type II CAAX endopeptidase family protein	-

Sequence

Protein

• Length: 155 a.a.
• Molecular weight: 17515.10 Da
• Isoelectric Point: 9.7290

>NTDB_id=581482 JGX27_RS00705 WP_012961330.1 107622..108089(+) (comYF) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MFMRGKRKYYTLKKTSLKAFTLIECLVSLLVISGAILVYNALTQSISANVHYLSENQEENWLLFSQQLRAELANCQLDKV
ENNKLYVTKSSQKLAFGQSKADDFRKTNASGQGYQPMIFGVKSSAISRDGQKVTMTLNLENGLERTFVYTFETAS

Nucleotide

• Length: 468 bp

>NTDB_id=581482 JGX27_RS00705 WP_012961330.1 107622..108089(+) (comYF) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGTTTATGAGGGGAAAACGGAAATATTACACGTTAAAAAAGACTAGTTTAAAGGCATTCACCCTCATAGAATGTTTGGT
TTCTTTATTGGTAATTTCGGGTGCTATTCTTGTTTACAATGCCTTAACGCAATCTATTTCTGCAAATGTGCATTATTTGT
CGGAAAATCAAGAGGAAAACTGGCTTTTGTTTTCACAACAGCTGCGTGCGGAGCTTGCCAATTGTCAATTAGATAAGGTT
GAAAATAACAAGCTATATGTGACGAAGTCCAGTCAAAAGTTGGCATTTGGACAGTCAAAGGCTGATGATTTTCGTAAAAC
AAACGCATCTGGTCAAGGCTATCAGCCAATGATATTTGGAGTAAAATCTTCTGCTATTTCTAGAGATGGTCAGAAGGTGA
CAATGACATTAAATTTAGAGAATGGTTTGGAGAGGACATTTGTTTACACTTTTGAAACGGCAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (51-144)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.554	89.677	0.516
comYF	Streptococcus mutans UA159	56.835	89.677	0.51
comGF/cglF	Streptococcus pneumoniae Rx1	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae D39	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae R6	46.429	90.323	0.419
comGF/cglF	Streptococcus pneumoniae TIGR4	46.429	90.323	0.419
comGF/cglF	Streptococcus mitis NCTC 12261	45.07	91.613	0.413
comGF/cglF	Streptococcus mitis SK321	44.366	91.613	0.406
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	89.032	0.387