NTDB

Overview

Name	comYC	Type	Machinery gene
Locus tag	JGX27_RS00690	Genome accession	NZ_CP077423
Coordinates	106713..107006 (+)	Length	97 a.a.
NCBI ID	WP_009853231.1	Uniprot ID	-
Organism	Streptococcus gallolyticus subsp. gallolyticus TX20005
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 101713..112006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JGX27_RS00675 (JGX27_00675)	-	104366..104734 (+)	369	WP_009853228.1	DUF1033 family protein	-
JGX27_RS00680 (JGX27_00680)	comYA	104805..105746 (+)	942	WP_009853229.1	competence type IV pilus ATPase ComGA	Machinery gene
JGX27_RS00685 (JGX27_00685)	comYB	105628..106713 (+)	1086	WP_012961328.1	competence type IV pilus assembly protein ComGB	Machinery gene
JGX27_RS00690 (JGX27_00690)	comYC	106713..107006 (+)	294	WP_009853231.1	competence type IV pilus major pilin ComGC	Machinery gene
JGX27_RS00695 (JGX27_00695)	comYD	106990..107421 (+)	432	WP_009853232.1	competence type IV pilus minor pilin ComGD	Machinery gene
JGX27_RS00700 (JGX27_00700)	comGE	107375..107668 (+)	294	WP_012961329.1	competence type IV pilus minor pilin ComGE	-
JGX27_RS00705 (JGX27_00705)	comYF	107622..108089 (+)	468	WP_012961330.1	competence type IV pilus minor pilin ComGF	Machinery gene
JGX27_RS00710 (JGX27_00710)	comYG	108061..108375 (+)	315	WP_009853235.1	competence type IV pilus minor pilin ComGG	Machinery gene
JGX27_RS00715 (JGX27_00715)	comYH	108448..109404 (+)	957	WP_009853236.1	class I SAM-dependent methyltransferase	Machinery gene
JGX27_RS00720 (JGX27_00720)	-	109457..110656 (+)	1200	WP_009853237.1	acetate kinase	-
JGX27_RS00725 (JGX27_00725)	-	110818..111018 (+)	201	WP_012961332.1	helix-turn-helix transcriptional regulator	-
JGX27_RS00730 (JGX27_00730)	-	111028..111237 (+)	210	WP_009853239.1	hypothetical protein	-
JGX27_RS00735 (JGX27_00735)	-	111250..111702 (+)	453	WP_009853240.1	hypothetical protein	-

Sequence

Protein

Download Length: 97 a.a. Molecular weight: 11042.18 Da Isoelectric Point: 9.9310

                                >NTDB_id=581480 JGX27_RS00690 WP_009853231.1 106713..107006(+) (comYC) [Streptococcus gallolyticus subsp. gallolyticus TX20005]

MKKIWKKLRQKTVKGFTLVEMLIVLLIISVLMLLFVPNLSKQKDVVREKGDAAVVKVVESQMDLYEVKTGDKPTVDDLVE

VGYITSEQAKTYNEAKK

Nucleotide

Download Length: 294 bp

                                >NTDB_id=581480 JGX27_RS00690 WP_009853231.1 106713..107006(+) (comYC) [Streptococcus gallolyticus subsp. gallolyticus TX20005]

ATGAAAAAGATTTGGAAAAAATTACGTCAGAAAACGGTAAAAGGGTTCACACTTGTGGAGATGTTGATTGTGCTTCTTAT

TATCAGTGTTTTAATGTTGCTTTTTGTACCGAATTTGAGTAAGCAAAAGGACGTTGTTCGTGAAAAAGGCGATGCTGCTG

TTGTGAAAGTGGTAGAGAGCCAAATGGATTTGTACGAAGTGAAAACGGGAGATAAACCAACTGTTGATGATTTAGTTGAA

GTTGGCTACATCACTTCTGAACAAGCAAAAACTTACAATGAAGCTAAAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-34)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYC	Streptococcus suis isolate S10	67.391	94.845	0.639
comYC	Streptococcus gordonii str. Challis substr. CH1	64.773	90.722	0.588
comGC/cglC	Streptococcus mitis SK321	60.638	96.907	0.588
comGC/cglC	Streptococcus pneumoniae R6	59.574	96.907	0.577
comGC/cglC	Streptococcus mitis NCTC 12261	59.574	96.907	0.577
comGC/cglC	Streptococcus pneumoniae TIGR4	59.574	96.907	0.577
comGC/cglC	Streptococcus pneumoniae Rx1	59.574	96.907	0.577
comGC/cglC	Streptococcus pneumoniae D39	59.574	96.907	0.577
comYC	Streptococcus mutans UA140	58.427	91.753	0.536
comYC	Streptococcus mutans UA159	58.427	91.753	0.536
comGC	Lactococcus lactis subsp. cremoris KW2	56.667	92.784	0.526

Detailed information NTG0581480