Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   JGX27_RS00715 Genome accession   NZ_CP077423
Coordinates   108448..109404 (+) Length   318 a.a.
NCBI ID   WP_009853236.1    Uniprot ID   A0A139R3Z2
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 103448..114404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS00675 (JGX27_00675) - 104366..104734 (+) 369 WP_009853228.1 DUF1033 family protein -
  JGX27_RS00680 (JGX27_00680) comYA 104805..105746 (+) 942 WP_009853229.1 competence type IV pilus ATPase ComGA Machinery gene
  JGX27_RS00685 (JGX27_00685) comYB 105628..106713 (+) 1086 WP_012961328.1 competence type IV pilus assembly protein ComGB Machinery gene
  JGX27_RS00690 (JGX27_00690) comYC 106713..107006 (+) 294 WP_009853231.1 competence type IV pilus major pilin ComGC Machinery gene
  JGX27_RS00695 (JGX27_00695) comYD 106990..107421 (+) 432 WP_009853232.1 competence type IV pilus minor pilin ComGD Machinery gene
  JGX27_RS00700 (JGX27_00700) comGE 107375..107668 (+) 294 WP_012961329.1 competence type IV pilus minor pilin ComGE -
  JGX27_RS00705 (JGX27_00705) comYF 107622..108089 (+) 468 WP_012961330.1 competence type IV pilus minor pilin ComGF Machinery gene
  JGX27_RS00710 (JGX27_00710) comYG 108061..108375 (+) 315 WP_009853235.1 competence type IV pilus minor pilin ComGG Machinery gene
  JGX27_RS00715 (JGX27_00715) comYH 108448..109404 (+) 957 WP_009853236.1 class I SAM-dependent methyltransferase Machinery gene
  JGX27_RS00720 (JGX27_00720) - 109457..110656 (+) 1200 WP_009853237.1 acetate kinase -
  JGX27_RS00725 (JGX27_00725) - 110818..111018 (+) 201 WP_012961332.1 helix-turn-helix transcriptional regulator -
  JGX27_RS00730 (JGX27_00730) - 111028..111237 (+) 210 WP_009853239.1 hypothetical protein -
  JGX27_RS00735 (JGX27_00735) - 111250..111702 (+) 453 WP_009853240.1 hypothetical protein -
  JGX27_RS00740 (JGX27_00740) - 111714..112352 (+) 639 WP_009853241.1 type II CAAX endopeptidase family protein -
  JGX27_RS00745 (JGX27_00745) proC 112412..113182 (-) 771 WP_009853242.1 pyrroline-5-carboxylate reductase -
  JGX27_RS00750 (JGX27_00750) pepA 113243..114310 (-) 1068 WP_009853243.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 36027.96 Da        Isoelectric Point: 4.4127

>NTDB_id=581484 JGX27_RS00715 WP_009853236.1 108448..109404(+) (comYH) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MNFEKIETAYELILENIQLIENELKTHIYDALIEQNSFYLGAEGASEEVAANNEKLRQLALTKEEWRRAFQFIFIKAGQT
EQLQANHQFTPDAIGFILLFLIENLTDSDKIDLLEIGSGTGNLAQTLLNNSSKELNYLGIEVDDLLIDLSASIAEVMDSD
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDDIAKRYKVASSDEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKQWLKDYADIIAVITLPESIFGNAANAKSIFVLKKQAAHTPETFVYPLSDLQSREALTDFIRKFQKWKVDNMNF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=581484 JGX27_RS00715 WP_009853236.1 108448..109404(+) (comYH) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGAATTTTGAAAAAATTGAAACAGCCTATGAGCTGATTTTAGAAAATATCCAATTAATTGAAAATGAGTTAAAAACTCA
TATTTATGATGCGCTTATTGAACAGAATTCTTTTTACTTGGGGGCTGAAGGTGCCAGTGAAGAAGTTGCTGCCAACAATG
AGAAACTGCGTCAGCTTGCATTGACCAAAGAAGAGTGGCGTCGAGCTTTCCAATTTATCTTTATCAAAGCTGGTCAAACA
GAGCAGCTGCAAGCCAATCATCAATTTACACCAGATGCTATTGGTTTTATTTTGCTGTTCTTGATTGAAAATCTGACAGA
TTCAGATAAAATTGATCTTTTAGAAATTGGTAGTGGGACAGGAAACCTTGCTCAAACATTGTTAAACAATTCGTCTAAAG
AATTAAATTATCTTGGGATTGAAGTTGACGATTTATTGATTGATTTATCAGCAAGTATTGCAGAAGTGATGGATTCTGAT
GCTCAGTTTATTCAAGAAGATGCTGTGCGTCCACAAATTCTGAAAGAAAGTGATGTGATTATTAGTGATTTGCCAGTTGG
TTTTTATCCTAATGATGACATTGCCAAACGTTATAAAGTGGCAAGTTCTGATGAGCATACCTATGCCCACCATTTGTTAA
TGGAACAATCGTTAAAATATCTCAAAAAAGATGGTATTGCAGTCTTTTTGGCGCCCGTCAGTCTTTTGACAAGTAAGCAA
AGTGATTTATTGAAACAATGGTTGAAAGATTACGCGGATATTATCGCCGTGATTACCTTGCCAGAATCTATTTTTGGTAA
TGCAGCGAATGCAAAATCAATTTTTGTTTTGAAAAAACAGGCTGCGCATACGCCAGAAACCTTTGTTTATCCACTTTCTG
ACTTACAAAGTCGTGAAGCTCTGACTGATTTCATTAGAAAATTTCAAAAATGGAAAGTTGATAATATGAATTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(71-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139R3Z2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

68.987

99.371

0.686
  comYH Streptococcus mutans UA159

68.671

99.371

0.682