Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KSL88_RS01045 Genome accession   NZ_CP077421
Coordinates   248181..249707 (-) Length   508 a.a.
NCBI ID   WP_224072950.1    Uniprot ID   -
Organism   Pectobacterium polaris strain QK413-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 246935..248110 248181..249707 flank 71


Gene organization within MGE regions


Location: 246935..249707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSL88_RS01040 (KSL88_01040) - 246935..248110 (+) 1176 Protein_200 IS4 family transposase -
  KSL88_RS01045 (KSL88_01045) comM 248181..249707 (-) 1527 WP_224072950.1 YifB family Mg chelatase-like AAA ATPase Machinery gene

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55455.05 Da        Isoelectric Point: 6.6907

>NTDB_id=581432 KSL88_RS01045 WP_224072950.1 248181..249707(-) (comM) [Pectobacterium polaris strain QK413-1]
MSLAVTYTRAMIGVQAPGVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLNRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDVTPVPQIGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRERPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLAARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=581432 KSL88_RS01045 WP_224072950.1 248181..249707(-) (comM) [Pectobacterium polaris strain QK413-1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCGCCGGGCGTTTATATCGAAGTTCACATCAGCAG
CGGGCTACCGGCCCTAACGCTGGTCGGCTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTTA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAACCTCGCCCCCGCAGACCTGCCAAAGGAAGGGGGACGC
TACGATCTTCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAACCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCTGCATTGGAAGCCATAAAGTCAGGCC
GCCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTGATGGCCGGGCATTTG
TTGGACGTGTGTGCTTTTCTCAGCGGAGAAGAGGAATTGCTCAGTTGCTCCGACGTAACGCCTGTTCCACAGATCGGGGA
AGATACGCTCGATCTGAAGGATATCATCGGTCAGGAACAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGTCACA
ACCTGCTCTTGCTAGGACCACCAGGAACAGGGAAAACCATGCTGGCGAGTCGGTTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAATAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGAAAGACC
ATTTAGAGCACCTCACCATAGTTCCTCCATGGCTGCGCTCGTGGGCGGAGGGTCACTGCCCAAACCCGGAGAAATCTCAC
TCGCTCACAATGGCGTACTGTTTTTGGATGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTA
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCCAAAGTGTGCTACCCAGCACGGGTGCAGCTGGTCGCCGCAATGAA
TCCCAGCCCGTCAGGCCACTATCAGGGCATTCATAACCGATTACCCGCACAGCAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCCCAGCAGCATTAC
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGGCCGCACGGCAGATACAACTGAAGCGGGCAAATAAAATCAA
CGCACTGCTCACGTCACGCGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCAACCTATCTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCGTGGCACAGGATATTGAAAGTTGCGCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.427

99.606

0.642
  comM Vibrio cholerae strain A1552

64.215

99.016

0.636
  comM Glaesserella parasuis strain SC1401

63.065

100

0.632
  comM Vibrio campbellii strain DS40M4

62.624

99.016

0.62
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.943

99.803

0.469