Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6L62_RS20925 | Genome accession | NZ_CP077411 |
| Coordinates | 4403272..4403802 (+) | Length | 176 a.a. |
| NCBI ID | WP_029740211.1 | Uniprot ID | A0A263VT06 |
| Organism | Enterobacter asburiae strain FDAARGOS 1432 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4393928..4419346 | 4403272..4403802 | within | 0 |
Gene organization within MGE regions
Location: 4393928..4419346
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L62_RS20870 (I6L62_20870) | - | 4393928..4394218 (-) | 291 | WP_032662594.1 | hypothetical protein | - |
| I6L62_RS20875 (I6L62_20875) | - | 4394219..4394626 (-) | 408 | WP_033144411.1 | hypothetical protein | - |
| I6L62_RS20880 (I6L62_20880) | - | 4394692..4395174 (-) | 483 | WP_217072055.1 | ribonuclease domain-containing protein | - |
| I6L62_RS20885 (I6L62_20885) | - | 4395193..4395642 (-) | 450 | WP_048976345.1 | lysozyme | - |
| I6L62_RS20890 (I6L62_20890) | - | 4395642..4396244 (-) | 603 | WP_217072056.1 | DUF2589 domain-containing protein | - |
| I6L62_RS20895 (I6L62_20895) | - | 4396320..4396877 (-) | 558 | WP_023334176.1 | DUF2589 domain-containing protein | - |
| I6L62_RS20900 (I6L62_20900) | tyrB | 4397084..4398277 (+) | 1194 | WP_217072057.1 | aromatic amino acid transaminase | - |
| I6L62_RS20905 (I6L62_20905) | aphA | 4398596..4399309 (+) | 714 | WP_182072276.1 | acid phosphatase AphA | - |
| I6L62_RS20910 (I6L62_20910) | - | 4399423..4399839 (+) | 417 | WP_023310052.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| I6L62_RS20915 (I6L62_20915) | - | 4399842..4400195 (+) | 354 | WP_023310053.1 | MmcQ/YjbR family DNA-binding protein | - |
| I6L62_RS20920 (I6L62_20920) | uvrA | 4400199..4403021 (-) | 2823 | WP_217072058.1 | excinuclease ABC subunit UvrA | - |
| I6L62_RS20925 (I6L62_20925) | ssb | 4403272..4403802 (+) | 531 | WP_029740211.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| I6L62_RS20930 (I6L62_20930) | - | 4403961..4405208 (+) | 1248 | WP_217072059.1 | site-specific integrase | - |
| I6L62_RS20935 (I6L62_20935) | - | 4405195..4406757 (+) | 1563 | WP_198907188.1 | site-specific integrase | - |
| I6L62_RS20940 (I6L62_20940) | - | 4406750..4408783 (+) | 2034 | WP_217072060.1 | integrase | - |
| I6L62_RS20945 (I6L62_20945) | - | 4408776..4409195 (+) | 420 | WP_217072061.1 | hypothetical protein | - |
| I6L62_RS20950 (I6L62_20950) | - | 4409435..4410523 (+) | 1089 | WP_198907191.1 | AAA family ATPase | - |
| I6L62_RS20955 (I6L62_20955) | - | 4410520..4411218 (+) | 699 | WP_198907192.1 | hypothetical protein | - |
| I6L62_RS20960 (I6L62_20960) | - | 4411874..4415371 (+) | 3498 | WP_217072062.1 | hypothetical protein | - |
| I6L62_RS20965 (I6L62_20965) | - | 4415364..4415852 (+) | 489 | WP_198907194.1 | hypothetical protein | - |
| I6L62_RS20970 (I6L62_20970) | - | 4415849..4417087 (+) | 1239 | WP_198907195.1 | hypothetical protein | - |
| I6L62_RS20975 (I6L62_20975) | - | 4417080..4417532 (+) | 453 | WP_217072063.1 | DUF4231 domain-containing protein | - |
| I6L62_RS20980 (I6L62_20980) | - | 4418226..4419346 (+) | 1121 | Protein_4105 | IS3 family transposase | - |
Sequence
Protein
Download Length: 176 a.a. Molecular weight: 18792.81 Da Isoelectric Point: 5.2456
>NTDB_id=581410 I6L62_RS20925 WP_029740211.1 4403272..4403802(+) (ssb) [Enterobacter asburiae strain FDAARGOS 1432]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF
Nucleotide
Download Length: 531 bp
>NTDB_id=581410 I6L62_RS20925 WP_029740211.1 4403272..4403802(+) (ssb) [Enterobacter asburiae strain FDAARGOS 1432]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGTGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75.556 |
100 |
0.773 |
| ssb | Glaesserella parasuis strain SC1401 |
56.216 |
100 |
0.591 |
| ssb | Neisseria meningitidis MC58 |
46.629 |
100 |
0.472 |
| ssb | Neisseria gonorrhoeae MS11 |
46.629 |
100 |
0.472 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.556 |
100 |
0.364 |