Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6L37_RS03370 Genome accession   NZ_CP077399
Coordinates   700598..702112 (+) Length   504 a.a.
NCBI ID   WP_216993267.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1407     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 695598..707112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L37_RS03355 (I6L37_03355) - 697349..698293 (-) 945 WP_010635712.1 branched-chain amino acid transaminase -
  I6L37_RS03360 (I6L37_03360) ilvM 698306..698569 (-) 264 WP_017787029.1 acetolactate synthase 2 small subunit -
  I6L37_RS03365 (I6L37_03365) ilvG 698566..700212 (-) 1647 WP_216993266.1 acetolactate synthase 2 catalytic subunit -
  I6L37_RS03370 (I6L37_03370) comM 700598..702112 (+) 1515 WP_216993267.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6L37_RS03375 (I6L37_03375) - 702230..703129 (+) 900 WP_216993268.1 acyltransferase -
  I6L37_RS03380 (I6L37_03380) - 703136..704092 (+) 957 WP_216993269.1 acyltransferase -
  I6L37_RS03385 (I6L37_03385) - 704047..704523 (-) 477 WP_216993270.1 DUF523 domain-containing protein -
  I6L37_RS03390 (I6L37_03390) - 704520..705170 (-) 651 WP_042072586.1 DNA mismatch repair protein MutT -
  I6L37_RS03395 (I6L37_03395) - 705245..705880 (+) 636 WP_216993271.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54549.45 Da        Isoelectric Point: 7.4493

>NTDB_id=581213 I6L37_RS03370 WP_216993267.1 700598..702112(+) (comM) [Aeromonas sp. FDAARGOS 1407]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPILPKGSLTGKAERG
ESSQQIRERVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=581213 I6L37_RS03370 WP_216993267.1 700598..702112(+) (comM) [Aeromonas sp. FDAARGOS 1407]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTCGCGGCACCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGTCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TTAACGGCAATTTCGAGTTTCCGTCCAAGCACATCACAGTCAATCTGGCTCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTAGCCATCGCCATCGGTATTCTCGCCGCTTCCAAACAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGCTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGACGCCGGAC
GCACCCTGCTGGTTCCGCGGGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAAGTACGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGTCAATACGAGTTGCCGCTGCCGGATCCCCAGAGCGCGGAGAGCCTGCCCGACGT
GCCGGACCTGCAGGACGTGATCGGCCAATCCCAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATCTTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCTCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGTGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGATTCCCTGCGTGAGCCGCTGGAGACG
GGCCATATCACCATCAGCCGGGCTGCCCGTCAGGTGGACTTTCCCGCTCGTTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGACGGTCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTCCTCGACCGCTTCGACCTGACGGTGGAAGTGCCGATCTTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGAGGG
GAGTCGAGCCAACAGATCCGCGAGCGGGTGCTGGCGGCGCGCGAGCGCATGCTGAGTCGCAATGGCAAGCTCAACAACCT
GCTTGATAGTCGTGAAATCGAAGACATTTGCCGATTATCGCCACAGGATGCCGAATTTCTGGAGAACGCCATCCAGAAGC
TCGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATCGCCGATCTGGCGGGGCAGCCTGCCATC
GGCAAGGAGCACCTGATCGAGGCGCTCGGCTATCGCGCCATGGACCGCCTGCTCTCCAGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Vibrio campbellii strain DS40M4

62.55

99.603

0.623
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466