Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6L39_RS07205 Genome accession   NZ_CP077395
Coordinates   1502452..1503969 (-) Length   505 a.a.
NCBI ID   WP_216991426.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1409     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1497452..1508969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L39_RS07180 (I6L39_07180) - 1498677..1499312 (-) 636 WP_216991422.1 nicotinamidase -
  I6L39_RS07185 (I6L39_07185) - 1499387..1500037 (+) 651 WP_042078198.1 DNA mismatch repair protein MutT -
  I6L39_RS07190 (I6L39_07190) - 1500034..1500522 (+) 489 WP_216991423.1 DUF523 domain-containing protein -
  I6L39_RS07195 (I6L39_07195) - 1500465..1501412 (-) 948 WP_216991424.1 acyltransferase -
  I6L39_RS07200 (I6L39_07200) - 1501420..1502319 (-) 900 WP_216991425.1 acyltransferase -
  I6L39_RS07205 (I6L39_07205) comM 1502452..1503969 (-) 1518 WP_216991426.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6L39_RS07210 (I6L39_07210) ilvG 1504354..1506000 (+) 1647 WP_216991427.1 acetolactate synthase 2 catalytic subunit -
  I6L39_RS07215 (I6L39_07215) ilvM 1505997..1506260 (+) 264 WP_042078191.1 acetolactate synthase 2 small subunit -
  I6L39_RS07220 (I6L39_07220) - 1506273..1507205 (+) 933 WP_216991428.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54886.87 Da        Isoelectric Point: 7.9900

>NTDB_id=581143 I6L39_RS07205 WP_216991426.1 1502452..1503969(-) (comM) [Aeromonas sp. FDAARGOS 1409]
MSLAVVYSRASLGITAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPAKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSTETPPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAQRG
ESSGQIRERVLRARERMLARNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EREHLIEALGYRAMDRLLTRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=581143 I6L39_RS07205 WP_216991426.1 1502452..1503969(-) (comM) [Aeromonas sp. FDAARGOS 1409]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATCACGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGGCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTACGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGGCCAAGCACATCACGGTCAACCTGGCCCCCGCCGACCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTTGATCACGAATTTTT
GGGGGAGCTGGCCCTGACCGGCGAGATCCGCCCCGTACTCGGGGTGCTTCCCTCGGTGCTCGCCTGCCGCGACGCGGGCC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCCGAGGCTTCGCTTATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCAGGCCAGTACGAGCTCCCGTTGCCGGAGCCCCAGAGCACGGAGACGCCGCCCGATGT
GCCGGATCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCGAGCCGGCTGCCCGGCATTCTGCCGCCGCTGAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGGGCCGGTCACTGGCACCACAGACCCTATCG
TACGCCGCACCACAGCGCCTCGGCGGTAGCCCTGGTGGGCGGTGGCAGTCACCCTCGTCCTGGCGAAATATCCCTGGCCC
ACAACGGCGTGCTGTTTCTGGACGAACTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGCCAGGTGGACTTTCCCGCCCGCTTCCAGCTGGTGGGGGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGTCCGGACCAGATCCTGCGCTACCTCGGCAAGCTCTCAGGCC
CCTTCCTCGACCGGTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCACAGCGGGGG
GAATCGAGCGGTCAGATCCGCGAACGGGTGCTGAGGGCGCGCGAGCGGATGCTGGCCCGCAACGGCAAGCTCAACAACCT
GCTGGACAGCCGTGAAATCGAAGAAATTTGCCGTTTATCACCGCAGGATGCCGAATTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGGATCCTGCGGGTGTCGCGCACCATCGCCGATCTCGCAGGGCGGCCCGCCATC
GAGAGGGAGCATCTCATCGAGGCGCTCGGTTACCGGGCCATGGACCGGCTGCTGACGCGCCTGCGCGGCGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.406

0.634
  comM Vibrio campbellii strain DS40M4

62.948

99.406

0.626
  comM Haemophilus influenzae Rd KW20

61.66

100

0.618
  comM Glaesserella parasuis strain SC1401

60.63

100

0.61
  comM Legionella pneumophila str. Paris

51.297

99.208

0.509
  comM Legionella pneumophila strain ERS1305867

51.297

99.208

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.365

100

0.467