Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   MTR79_RS15280 Genome accession   NZ_CP094918
Coordinates   3380796..3381809 (-) Length   337 a.a.
NCBI ID   WP_086704961.1    Uniprot ID   A0ABP6IWR0
Organism   Streptomyces sp. BJ20     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3375796..3386809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTR79_RS15245 - 3376328..3376708 (+) 381 WP_244790651.1 transglycosylase family protein -
  MTR79_RS15250 - 3376769..3377542 (-) 774 WP_244790653.1 DUF4328 domain-containing protein -
  MTR79_RS15255 - 3377743..3378516 (+) 774 WP_244790655.1 SDR family oxidoreductase -
  MTR79_RS15260 - 3378546..3378902 (+) 357 WP_244790657.1 nuclear transport factor 2 family protein -
  MTR79_RS15265 - 3378962..3379798 (+) 837 WP_086704958.1 MerR family transcriptional regulator -
  MTR79_RS15270 - 3379889..3380344 (+) 456 WP_244790659.1 cytidine deaminase -
  MTR79_RS15275 - 3380357..3380785 (-) 429 WP_244793178.1 glutaredoxin domain-containing protein -
  MTR79_RS15280 cytR 3380796..3381809 (-) 1014 WP_086704961.1 LacI family DNA-binding transcriptional regulator Regulator
  MTR79_RS15285 - 3382111..3383418 (+) 1308 WP_114875727.1 extracellular solute-binding protein -
  MTR79_RS15290 - 3383510..3384505 (+) 996 WP_048459958.1 sugar ABC transporter permease -
  MTR79_RS15295 - 3384518..3385438 (+) 921 WP_048459957.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36077.89 Da        Isoelectric Point: 6.3691

>NTDB_id=581014 MTR79_RS15280 WP_086704961.1 3380796..3381809(-) (cytR) [Streptomyces sp. BJ20]
MTGNRRPTIKTVAARAGVGRTTVSRVVNGSDLVSADARARVLAAIKELNYVPNSVARGLVTNRTNAVALVIPESESRLGS
EPFFAALIRGVSGALAESGTQLQLMLVRDQAERDQLTESVATRRVDGVLLVSVHAEDRLPGILEEMGLPTVLAGRRDAGE
QLSYVNSDNAGGAAEAVRHLLGRGRSRIATITGPQDMDVGRARLAGWHAAHEEAGVRADESLIEPGDFSEDSGGRAMRLL
LERTPDLDAVFAASDLMAVGALAELRRQKRRVPVDVAVVGFEDSVLARHTNPPLTTVRQPVEELGRTMARILTDITLNDG
PRQQITLPTELVVRDSS

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=581014 MTR79_RS15280 WP_086704961.1 3380796..3381809(-) (cytR) [Streptomyces sp. BJ20]
ATGACGGGCAACCGCCGTCCCACGATCAAGACCGTCGCCGCCCGCGCCGGCGTGGGTCGCACCACGGTCTCCCGCGTCGT
CAACGGCTCCGACCTGGTCAGCGCCGACGCCCGGGCGCGGGTCCTGGCGGCGATCAAAGAACTGAACTACGTGCCCAACT
CCGTCGCCCGCGGTCTGGTCACCAACCGCACCAACGCCGTGGCCCTGGTGATCCCGGAATCGGAGAGCCGGCTCGGCTCG
GAGCCGTTCTTCGCCGCGCTGATCCGCGGTGTGAGCGGCGCGCTCGCCGAGAGCGGCACACAGCTGCAGCTGATGCTGGT
GCGTGACCAGGCCGAACGCGACCAGCTCACCGAGTCGGTGGCCACCCGCCGGGTGGACGGTGTGCTGCTGGTCTCCGTGC
ACGCCGAGGACCGGCTGCCCGGCATCCTCGAGGAGATGGGCCTGCCCACGGTGCTCGCCGGCCGCCGCGACGCGGGCGAG
CAGCTGAGCTACGTCAACTCCGACAACGCGGGCGGCGCCGCCGAGGCCGTCCGGCATCTGCTGGGCCGCGGGCGGAGCCG
GATCGCGACGATCACCGGCCCCCAGGACATGGACGTCGGCCGCGCCCGCCTCGCGGGGTGGCACGCCGCGCACGAGGAAG
CGGGCGTTCGCGCGGACGAGTCGCTGATCGAGCCGGGCGACTTCTCCGAGGACAGCGGCGGCCGCGCCATGCGTTTGCTT
CTTGAACGCACGCCGGATCTGGACGCCGTGTTCGCCGCGTCGGACCTCATGGCGGTGGGCGCGCTGGCCGAATTGCGCCG
ACAGAAGCGCCGGGTGCCGGTCGACGTGGCCGTGGTCGGCTTCGAGGACTCGGTGCTCGCCCGGCACACCAACCCGCCGC
TGACGACGGTGCGTCAGCCGGTGGAGGAGCTGGGCCGCACGATGGCCCGCATCCTCACCGACATCACCCTGAACGACGGG
CCCCGGCAGCAGATCACCCTGCCCACGGAGCTGGTCGTCCGTGATTCGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

35.838

100

0.368