Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6L36_RS12045 Genome accession   NZ_CP077378
Coordinates   2571898..2573415 (+) Length   505 a.a.
NCBI ID   WP_045522719.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1406     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2566898..2578415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L36_RS12030 (I6L36_12030) - 2568656..2569600 (-) 945 WP_128273003.1 branched-chain amino acid transaminase -
  I6L36_RS12035 (I6L36_12035) ilvM 2569613..2569870 (-) 258 WP_010676086.1 acetolactate synthase 2 small subunit -
  I6L36_RS12040 (I6L36_12040) ilvG 2569867..2571513 (-) 1647 WP_201921217.1 acetolactate synthase 2 catalytic subunit -
  I6L36_RS12045 (I6L36_12045) comM 2571898..2573415 (+) 1518 WP_045522719.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6L36_RS12050 (I6L36_12050) - 2573548..2574447 (+) 900 WP_143236905.1 acyltransferase -
  I6L36_RS12055 (I6L36_12055) - 2574455..2575402 (+) 948 WP_201921214.1 acyltransferase -
  I6L36_RS12060 (I6L36_12060) - 2575345..2575821 (-) 477 WP_201921212.1 DUF523 domain-containing protein -
  I6L36_RS12065 (I6L36_12065) - 2575818..2576123 (-) 306 WP_143236902.1 hypothetical protein -
  I6L36_RS12070 (I6L36_12070) - 2576140..2576790 (-) 651 WP_201921210.1 DNA mismatch repair protein MutT -
  I6L36_RS12075 (I6L36_12075) - 2576865..2577500 (+) 636 WP_119197178.1 nicotinamidase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54690.58 Da        Isoelectric Point: 7.4701

>NTDB_id=581014 I6L36_RS12045 WP_045522719.1 2571898..2573415(+) (comM) [Aeromonas sp. FDAARGOS 1406]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPSVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGTHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPRGSLTGKAERG
ESSQQIRERVLGARERMLSRSGKLNNLLDSREIEDVCRLSPQDAEFLEGAIQKLGLSIRAWHRILRVSRTIADLAGHATI
ERAHLIEALGYRAMDRLLSRLRGGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=581014 I6L36_RS12045 WP_045522719.1 2571898..2573415(+) (comM) [Aeromonas sp. FDAARGOS 1406]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTGGGGTTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCTGCGGATCTGCCCAAGGAGGGGGGCCGT
TTCGACCTGGCCATCGCCATCGGCATTCTCGCAGCATCCAAGCAGATACCCGCAAAATACCTGCTAGACCACGAATTTTT
AGGGGAATTGGCCCTGACCGGCGAGATCCGCCCCGTGCTTGGGGTACTCCCCTCGGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTCCCACGGGAGAACGGTCCGGAGGCTTCCCTCATACAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCGGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGAACCCCAGAGCGCGGAGACCCTGCCCGACGT
GCCGGATCTGCAGGACGTGATCGGTCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCCCCCGGCACCGGCAAGAGCATGTTGGCCAGCCGTCTGCCCGGCATTCTGCCGCCGCTCAGCGAACAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCCCGCGCCGGCCACTGGCACCACAGGCCGTATCG
CACGCCCCATCACAGCGCCTCGGCGGTGGCGCTGGTGGGCGGGGGTACCCATCCCAGGCCTGGCGAAATTTCCCTCGCCC
ACAACGGGGTACTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTTCGCGAGCCGCTGGAAACC
GGGCACATTACCATCAGTCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGTGCCATGAATCCCAG
CCCCTGCGGCCATTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTATCTGGGCAAGCTCTCCGGCC
CCTTTCTCGATCGGTTCGATCTGACGGTAGAGGTCCCGCTCTTGCCCAGGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAATCGAGCCAGCAGATACGCGAACGGGTGCTGGGGGCGCGAGAGCGCATGCTGAGTCGCAGCGGAAAACTCAACAACCT
GCTGGATAGTCGTGAAATCGAAGATGTTTGCAGATTATCGCCACAGGATGCCGAGTTTCTGGAAGGTGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCACCATC
GAGAGAGCGCATCTGATCGAAGCCCTGGGCTATCGTGCCATGGACAGGCTGTTGTCGCGGCTGCGCGGGGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.745

99.406

0.634
  comM Haemophilus influenzae Rd KW20

61.66

100

0.618
  comM Vibrio campbellii strain DS40M4

61.952

99.406

0.616
  comM Glaesserella parasuis strain SC1401

60.63

100

0.61
  comM Legionella pneumophila str. Paris

50.992

99.802

0.509
  comM Legionella pneumophila strain ERS1305867

50.992

99.802

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.463