Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6L45_RS07110 Genome accession   NZ_CP077363
Coordinates   1487038..1488555 (-) Length   505 a.a.
NCBI ID   WP_216983815.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1415     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1482038..1493555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L45_RS07080 (I6L45_07080) pncB 1482095..1483273 (-) 1179 WP_216983811.1 nicotinate phosphoribosyltransferase -
  I6L45_RS07085 (I6L45_07085) - 1483275..1483910 (-) 636 WP_216983812.1 nicotinamidase -
  I6L45_RS07090 (I6L45_07090) - 1483985..1484635 (+) 651 WP_216983813.1 DNA mismatch repair protein MutT -
  I6L45_RS07095 (I6L45_07095) - 1484635..1485120 (+) 486 WP_167332250.1 DUF523 domain-containing protein -
  I6L45_RS07100 (I6L45_07100) - 1485063..1486010 (-) 948 WP_216983814.1 acyltransferase -
  I6L45_RS07105 (I6L45_07105) - 1486018..1486917 (-) 900 WP_134694222.1 acyltransferase -
  I6L45_RS07110 (I6L45_07110) comM 1487038..1488555 (-) 1518 WP_216983815.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6L45_RS07115 (I6L45_07115) ilvG 1488941..1490587 (+) 1647 WP_216983816.1 acetolactate synthase 2 catalytic subunit -
  I6L45_RS07120 (I6L45_07120) ilvM 1490584..1490841 (+) 258 WP_216983817.1 acetolactate synthase 2 small subunit -
  I6L45_RS07125 (I6L45_07125) - 1490854..1491798 (+) 945 WP_216983818.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54806.74 Da        Isoelectric Point: 7.4495

>NTDB_id=580892 I6L45_RS07110 WP_216983815.1 1487038..1488555(-) (comM) [Aeromonas sp. FDAARGOS 1415]
MSLAVVYSRASLGITAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQSAETLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQVLRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSGQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPVI
EREHLIEALGYRAMDRLLSRLRSGQ

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=580892 I6L45_RS07110 WP_216983815.1 1487038..1488555(-) (comM) [Aeromonas sp. FDAARGOS 1415]
ATGTCATTAGCTGTTGTTTATAGCCGTGCCAGCCTGGGGATAACGGCGCCGCAAGTCACGGTGGAGGTGCACCTCTCCAA
CGGCCTGCCCGCGTTCAACATGGTGGGCCTCCCGGAGACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCTCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCGGCTTCCAAGCAGATACCGGCAAAATACCTTCTCGATCACGAATTTTT
AGGGGAACTGGCTCTGACCGGCGAGATCCGCCCCGTGCTCGGTGTGCTGCCCGCCGTGCTCGCCTGCCGCGACGCAGGGC
GCACCCTGCTGGTTCCGCGGGAAAACGGCCCGGAGGCTTCGCTCATCCAGGACGCCGAGGTACGCACCGCCCATCAGCTG
CTGGCCGTTACCGCCTGGCTGGCGGGTCAGTACGAGCTGCCGCTGCCGGATCCCCAGAGCGCGGAAACCCTGCCCGACGT
GCCGGATCTGCAGGACGTGATCGGCCAGTCCCAGGCGAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGATTGCCCGGCATTCTGCCGCCGCTCAGCGAACAG
GAGGCGCAACAGACCGCCGCCATCCACTCTATCGGCGGCCTCACCCCGCGGGCCGGTCACTGGCACCACAGGCCCTATCG
CACGCCACACCACAGCGCCTCGGCAGTGGCGCTGGTGGGCGGCGGCAGCCACCCGAGGCCCGGCGAGATCTCCCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCGGAGTTTGAACGCAAGGTGCTCGACTCCCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGCCAGGTGGACTTCCCCGCCCGCTTCCAGCTGGTCGGTGCCATGAATCCCAG
CCCCTGCGGCCACTACGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGGTGCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTCCTCGACCGATTCGATCTGACGGTGGAGGTGCCGCTCCTGCCCAAGGGGAGCCTGACCGGCAAGGCCGAGCGGGGG
GAGTCGAGCGGTCAGATCCGCGAGCGGGTGCTGGGGGCGCGGGAGCGCATGCTGAGCCGCAATGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATCGAAGAGATTTGCCGCTTATCGCCGCAGGATGCCGAATTTCTGGAGAATGCGATCCAGAAGC
TCGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGCACCATCGCCGACCTCGCCGGACGACCCGTCATC
GAGCGGGAGCATCTGATCGAGGCGCTCGGCTATCGCGCCATGGATCGGCTGCTCTCGCGCCTGCGCAGCGGCCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.406

0.63
  comM Vibrio campbellii strain DS40M4

62.55

99.406

0.622
  comM Haemophilus influenzae Rd KW20

61.462

100

0.616
  comM Glaesserella parasuis strain SC1401

60.947

100

0.612
  comM Legionella pneumophila str. Paris

50.794

99.802

0.507
  comM Legionella pneumophila strain ERS1305867

50.794

99.802

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.465