Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L53_RS01610 Genome accession   NZ_CP077291
Coordinates   353416..353943 (+) Length   175 a.a.
NCBI ID   WP_042321101.1    Uniprot ID   A0A8H9NYF1
Organism   Citrobacter farmeri strain FDAARGOS 1423     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 348416..358943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L53_RS01595 (I6L53_01595) aphA 349108..349821 (+) 714 WP_042321094.1 acid phosphatase AphA -
  I6L53_RS01600 (I6L53_01600) - 349949..350299 (+) 351 WP_042321097.1 MmcQ/YjbR family DNA-binding protein -
  I6L53_RS01605 (I6L53_01605) uvrA 350341..353163 (-) 2823 WP_042321098.1 excinuclease ABC subunit UvrA -
  I6L53_RS01610 (I6L53_01610) ssb 353416..353943 (+) 528 WP_042321101.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6L53_RS01615 (I6L53_01615) - 354193..354624 (+) 432 WP_042321104.1 universal stress protein -
  I6L53_RS01620 (I6L53_01620) - 354691..357408 (-) 2718 WP_420914397.1 cation-transporting P-type ATPase -
  I6L53_RS01625 (I6L53_01625) - 357966..358247 (-) 282 WP_042321110.1 YjcB family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18917.98 Da        Isoelectric Point: 5.2456

>NTDB_id=580577 I6L53_RS01610 WP_042321101.1 353416..353943(+) (ssb) [Citrobacter farmeri strain FDAARGOS 1423]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGSWGQPQQPQGGNQFSGGAQPRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=580577 I6L53_RS01610 WP_042321101.1 353416..353943(+) (ssb) [Citrobacter farmeri strain FDAARGOS 1423]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCTGTTGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTCGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAGGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTTGAGAAGTACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAAATGCTGGGTGGTCGTCAGGGCGGCGGCGCACCGGCTGGTGGCCAGCAGCAGCAAGGTAGTTGGGGTC
AGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGCCTCGCCCGCAGCAGCAGTCAGCTCCGGCAGCC
CCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.432

100

0.766
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.606
  ssb Neisseria meningitidis MC58

47.222

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.222

100

0.486
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371