Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6L58_RS13430 Genome accession   NZ_CP077290
Coordinates   2850320..2851840 (-) Length   506 a.a.
NCBI ID   WP_088209466.1    Uniprot ID   -
Organism   Enterobacter cancerogenus strain FDAARGOS 1428     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2845320..2856840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L58_RS13420 (I6L58_13420) hdfR 2849010..2849831 (-) 822 WP_006179201.1 HTH-type transcriptional regulator HdfR -
  I6L58_RS13425 (I6L58_13425) - 2849950..2850288 (+) 339 WP_006179202.1 DUF413 domain-containing protein -
  I6L58_RS13430 (I6L58_13430) comM 2850320..2851840 (-) 1521 WP_088209466.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6L58_RS13435 (I6L58_13435) ilvL 2852182..2852280 (+) 99 WP_001311244.1 ilv operon leader peptide -
  I6L58_RS13440 (I6L58_13440) ilvX 2852367..2852417 (+) 51 WP_193749778.1 peptide IlvX -
  I6L58_RS13445 (I6L58_13445) ilvG 2852420..2854066 (+) 1647 WP_088209467.1 acetolactate synthase 2 catalytic subunit -
  I6L58_RS13450 (I6L58_13450) ilvM 2854063..2854326 (+) 264 WP_088209468.1 acetolactate synthase 2 small subunit -
  I6L58_RS13455 (I6L58_13455) - 2854345..2855274 (+) 930 WP_006179207.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55005.14 Da        Isoelectric Point: 7.6079

>NTDB_id=580561 I6L58_RS13430 WP_088209466.1 2850320..2851840(-) (comM) [Enterobacter cancerogenus strain FDAARGOS 1428]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNASRLGSYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENAAEVSLIAEKGCLVAGHL
QEVCAYLEKRHELAEPEECHDTLPAPADDLSDILGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAILSLVNATSLHKQWRRRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAKFQLVAAMNPSPTGHYQGNHNRSTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRHPDARG
ESTAQVRERVIAAQERQYARQGRLNARLDNTGIRLWCPLKTEDAGWLEETLQRFGLSIRAWQRLLKVARTVADMEGCPDI
ERQHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=580561 I6L58_RS13430 WP_088209466.1 2850320..2851840(-) (comM) [Enterobacter cancerogenus strain FDAARGOS 1428]
ATGTCACTGTCAGTTGTCTATACGCGCGCGGCGCTCGGCGTGAAAGCTCCGCTCATTTCCGTTGAGGTGCATTTGAGCAA
CGGTTTACCCGGGCTAACGCTCGTGGGCCTGCCGGAAACGACCGTCAAAGAGGCCCGGGATCGGGTGCGCAGTGCAATTA
TCAATAGCGGTTATACCTTCCCGGCGAAGAAGATCACTATCAACCTCGCCCCAGCCGATTTGCCAAAGGAGGGCGGACGA
TATGATTTACCTATTGCTATCGCGCTTCTCGCCGCCTCTGAGCAGCTTAATGCCTCAAGGTTAGGCTCATATGAGTTCAT
CGGTGAACTGGCGCTTACAGGCGCGCTAAGAGGCGTTCCCGGTGCGATCTCGGGTGCGCTGGAAGCCATCCGCGCAGGAC
GGCAAATCATTGTGGCGAATGAGAATGCAGCAGAAGTTAGCCTCATAGCTGAGAAAGGTTGCCTGGTCGCCGGGCATTTG
CAGGAGGTTTGCGCGTATCTGGAAAAACGGCACGAGCTGGCTGAGCCGGAAGAGTGTCACGACACGCTGCCGGCACCCGC
AGACGATCTGAGCGACATCCTGGGCCAGGAGCAGGGGAAGCGAGCGTTAGAGATCACTGCTGCAGGTGGACATAATCTTT
TGCTCATCGGCCCGCCCGGGACGGGTAAAACCATGCTGGCAAGCAGGCTGAGCGGTTTGCTGCCTCCGCTCAACAACCAT
GAAGCCCTCGAAAGCGCGGCTATTTTAAGCCTGGTCAATGCGACGTCCCTGCACAAACAGTGGCGACGCCGCCCTTTCCG
ATCGCCGCACCACAGCGCCTCTCTCACGGCGATGGTAGGAGGCGGGGCAATCCCGGGGCCAGGTGAAATTTCACTGGCAC
ACAATGGCATTCTGTTTCTGGATGAACTGCCGGAATTTGAGCGGCGCGTGCTGGACGCGCTGCGCGAGCCGATAGAGTCG
GGAGAAATTCATATCTCCCGCACGCGGGCCAAAATTAGCTATCCCGCTAAATTTCAGCTGGTTGCGGCAATGAACCCCAG
CCCGACAGGGCATTACCAGGGCAATCACAACCGCTCGACGCCCGAGCAGACGCTGCGCTATCTGGGAAAACTCTCCGGCC
CCTTTCTCGACCGGTTTGATTTATCTCTTGAGATCCCTCTTCCTCCGCCTGGGCTACTTCGACACCCCGACGCCAGAGGT
GAAAGCACAGCGCAGGTGCGCGAACGGGTTATTGCTGCACAGGAGCGGCAGTACGCGCGTCAGGGCAGGCTCAACGCGCG
TCTTGATAACACGGGTATACGCCTGTGGTGTCCTCTCAAAACCGAAGACGCAGGCTGGCTGGAAGAGACGTTGCAAAGGT
TTGGGCTTTCCATTCGCGCATGGCAGCGCCTGTTGAAAGTGGCAAGAACTGTCGCCGATATGGAGGGATGCCCCGATATA
GAGAGGCAGCATTTGCAGGAGGCACTGAGCTATCGGGCGATTGATCGCCTGCTTCTTCATCTGCAAAAGCTGCTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.447

100

0.595
  comM Glaesserella parasuis strain SC1401

58.383

100

0.585
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.198

99.605

0.5
  comM Legionella pneumophila strain ERS1305867

50.198

99.605

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.393

100

0.435