Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6L34_RS11650 Genome accession   NZ_CP077237
Coordinates   2506936..2508450 (-) Length   504 a.a.
NCBI ID   WP_058056255.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1404     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2501936..2513450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L34_RS11625 (I6L34_11625) - 2503141..2503776 (-) 636 WP_005357452.1 nicotinamidase -
  I6L34_RS11630 (I6L34_11630) - 2503851..2504501 (+) 651 WP_058056258.1 DNA mismatch repair protein MutT -
  I6L34_RS11635 (I6L34_11635) - 2504498..2505013 (+) 516 WP_216954737.1 DUF523 domain-containing protein -
  I6L34_RS11640 (I6L34_11640) - 2504929..2505903 (-) 975 WP_216954738.1 acyltransferase -
  I6L34_RS11645 (I6L34_11645) - 2505910..2506809 (-) 900 WP_005356150.1 acyltransferase -
  I6L34_RS11650 (I6L34_11650) comM 2506936..2508450 (-) 1515 WP_058056255.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6L34_RS11655 (I6L34_11655) ilvG 2508835..2510481 (+) 1647 WP_058056254.1 acetolactate synthase 2 catalytic subunit -
  I6L34_RS11660 (I6L34_11660) ilvM 2510478..2510756 (+) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  I6L34_RS11665 (I6L34_11665) - 2510769..2511713 (+) 945 WP_058056253.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54656.47 Da        Isoelectric Point: 7.2612

>NTDB_id=580143 I6L34_RS11650 WP_058056255.1 2506936..2508450(-) (comM) [Aeromonas sp. FDAARGOS 1404]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPQPDPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAEQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=580143 I6L34_RS11650 WP_058056255.1 2506936..2508450(-) (comM) [Aeromonas sp. FDAARGOS 1404]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTCCGCAGTGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGGGGCCGC
TTCGATCTGGCCATCGCTATCGGCATTCTCGCTGCTTCCAAACAAATACCCGCAAAATACCTGCTCGATCACGAATTTTT
GGGGGAGTTGGCCCTGACCGGCGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACCCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCTTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACAGCTTGGCTGGCCGGTCAGTACGAACTGCCGCAGCCGGATCCCCAAAGCGCGGAGAGCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTTATCGGCCCGCCTGGCACCGGCAAGAGCATGTTAGCGAGCCGATTGCCCGGCATTCTGCCGCCACTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGTGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGCGCCTCCGCCGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGCCCCGGCGAAATTTCGTTGGCCC
ACAACGGGGTGCTGTTTTTGGATGAATTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGTGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTCGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAATCCCAG
CCCCTGTGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CTTTTCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGAGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGAGAGCGCATGCTGAGCCGTAACGGCAAACTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGAGCAATCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.221

99.802

0.631
  comM Haemophilus influenzae Rd KW20

61.265

100

0.615
  comM Vibrio campbellii strain DS40M4

61.554

99.603

0.613
  comM Glaesserella parasuis strain SC1401

60.75

100

0.611
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464