Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6L27_RS16540 Genome accession   NZ_CP077232
Coordinates   3507987..3508766 (+) Length   259 a.a.
NCBI ID   WP_016143660.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3502987..3513766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS16525 (I6L27_16530) ponA 3503569..3506130 (-) 2562 WP_125698047.1 penicillin-binding protein PBP1a -
  I6L27_RS16530 (I6L27_16535) comM 3506291..3507349 (+) 1059 WP_057104815.1 pilus assembly protein PilM Machinery gene
  I6L27_RS16535 (I6L27_16540) pilN 3507349..3507990 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  I6L27_RS16540 (I6L27_16545) pilO 3507987..3508766 (+) 780 WP_016143660.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L27_RS16545 (I6L27_16550) pilP 3508778..3509305 (+) 528 WP_216967670.1 pilus assembly protein PilP Machinery gene
  I6L27_RS16550 (I6L27_16555) pilQ 3509369..3511534 (+) 2166 WP_216967671.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L27_RS16555 (I6L27_16560) aroK 3511546..3512115 (+) 570 WP_016142884.1 shikimate kinase AroK -
  I6L27_RS16560 (I6L27_16565) aroB 3512144..3513226 (+) 1083 WP_216967672.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29378.33 Da        Isoelectric Point: 6.0348

>NTDB_id=580089 I6L27_RS16540 WP_016143660.1 3507987..3508766(+) (pilO) [Acinetobacter pittii strain FDAARGOS 1397]
MSPHELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVTIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFIVEAAPVKDSKSDIPVLNYSIKAKTYRYMGAGENQNNNDPQGGNGETQA
NTSDSHNVNIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=580089 I6L27_RS16540 WP_016143660.1 3507987..3508766(+) (pilO) [Acinetobacter pittii strain FDAARGOS 1397]
ATGAGTCCTCATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACTTTAGAAAAATTTCT
TCAGCAATTTAATACACTCGATATGAACAGCTATGGCAGTTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTATTGGCCTTGGGCTATTTTGTTACTATCCAGCCAAAGCTCCAAGCAATTGATAATGCTCAGGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGTAACTTGCAGCAATATCAGCTTCAACTTCAAGAAAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGAGTGAATTCTGGTCTGAAGTTTAAAAATATCCGTTTAGAAGATGAAGTGAAGCAGGAAATCTTTATTGAACAGCCG
ATTACGATTGAGGCAACAGGCGATTATCACGCTTTCGGTGCTTTCGTGAGCAGTATTGCGGCATTACCGCGTATTGTGAC
GATGCATGATTTTATTGTTGAAGCTGCTCCTGTTAAGGATAGTAAATCAGATATTCCTGTGCTTAATTATTCTATCAAAG
CAAAAACTTATCGCTATATGGGCGCTGGGGAAAACCAAAATAATAATGACCCACAAGGAGGAAATGGTGAGACGCAAGCC
AACACCTCCGATAGCCATAATGTAAATATTCCTTCTATCAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.286

86.486

0.772
  comO Acinetobacter baylyi ADP1

69.388

94.595

0.656