Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6L27_RS16535 Genome accession   NZ_CP077232
Coordinates   3507349..3507990 (+) Length   213 a.a.
NCBI ID   WP_016143661.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3502349..3512990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS16515 (I6L27_16520) - 3502394..3502726 (+) 333 WP_216967669.1 DUF7709 family protein -
  I6L27_RS16520 (I6L27_16525) rrmA 3502729..3503553 (+) 825 WP_081033599.1 putative RNA methyltransferase -
  I6L27_RS16525 (I6L27_16530) ponA 3503569..3506130 (-) 2562 WP_125698047.1 penicillin-binding protein PBP1a -
  I6L27_RS16530 (I6L27_16535) comM 3506291..3507349 (+) 1059 WP_057104815.1 pilus assembly protein PilM Machinery gene
  I6L27_RS16535 (I6L27_16540) pilN 3507349..3507990 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  I6L27_RS16540 (I6L27_16545) pilO 3507987..3508766 (+) 780 WP_016143660.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L27_RS16545 (I6L27_16550) pilP 3508778..3509305 (+) 528 WP_216967670.1 pilus assembly protein PilP Machinery gene
  I6L27_RS16550 (I6L27_16555) pilQ 3509369..3511534 (+) 2166 WP_216967671.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L27_RS16555 (I6L27_16560) aroK 3511546..3512115 (+) 570 WP_016142884.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23951.38 Da        Isoelectric Point: 5.4186

>NTDB_id=580088 I6L27_RS16535 WP_016143661.1 3507349..3507990(+) (pilN) [Acinetobacter pittii strain FDAARGOS 1397]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFSGWFYLNQKLSDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=580088 I6L27_RS16535 WP_016143661.1 3507349..3507990(+) (pilN) [Acinetobacter pittii strain FDAARGOS 1397]
ATGGCAACGATTAATTTACTCCCTTGGCGTGATGGGCTTCGGGAGCAGCGCAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTGTTTTCTGGGTGGTTTTATTTGAATCAAAAACTCAGTGATCAAGAACAAGCGA
ATCAACTCATTATCAGTACAAACCAGAATCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAACAGCGTGACGCA
ATTATTGAGCGTATGAAGCTCATCCAAGGATTACAAAGTCAGCGTCCAGTCGTTGTACGTTTGGTGGATGAATTGGTACG
CGTGACTCCAGCAGCCATGTATTTGACTAAATTCAGCCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCGGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAACGCTTTTATGAATTCTTTCTTAGCG
ACTGAAGAGAAAAAAGATAAGGCTGTAAGTTCTTTGCTTCCTCGAGTAGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGAGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGTAGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685