Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6L27_RS16545 Genome accession   NZ_CP077232
Coordinates   3508778..3509305 (+) Length   175 a.a.
NCBI ID   WP_216967670.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3503778..3514305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS16530 (I6L27_16535) comM 3506291..3507349 (+) 1059 WP_057104815.1 pilus assembly protein PilM Machinery gene
  I6L27_RS16535 (I6L27_16540) pilN 3507349..3507990 (+) 642 WP_016143661.1 PilN domain-containing protein Machinery gene
  I6L27_RS16540 (I6L27_16545) pilO 3507987..3508766 (+) 780 WP_016143660.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L27_RS16545 (I6L27_16550) pilP 3508778..3509305 (+) 528 WP_216967670.1 pilus assembly protein PilP Machinery gene
  I6L27_RS16550 (I6L27_16555) pilQ 3509369..3511534 (+) 2166 WP_216967671.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L27_RS16555 (I6L27_16560) aroK 3511546..3512115 (+) 570 WP_016142884.1 shikimate kinase AroK -
  I6L27_RS16560 (I6L27_16565) aroB 3512144..3513226 (+) 1083 WP_216967672.1 3-dehydroquinate synthase -
  I6L27_RS16565 (I6L27_16570) - 3513243..3514124 (+) 882 WP_216967673.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19275.43 Da        Isoelectric Point: 9.7301

>NTDB_id=580090 I6L27_RS16545 WP_216967670.1 3508778..3509305(+) (pilP) [Acinetobacter pittii strain FDAARGOS 1397]
MKIKKILLSLGVGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSMRNNRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=580090 I6L27_RS16545 WP_216967670.1 3508778..3509305(+) (pilP) [Acinetobacter pittii strain FDAARGOS 1397]
ATGAAAATAAAGAAAATTTTACTTTCTCTTGGGGTGGGCTTGGTTTTAGTCGGATGCGACTCGAGAATTGATGCCGTAAA
TCAACAAATGGCCGACATACGTAATCAGCCACCGCAAGCTATAGAGCCAGCGCCTGTTTTTACACCTGTCCCACAGTTTA
ATTATGCAGCCCATCAGTTAAAGAGCCCATTTTTACCAAGCTCGCTTGCTGCTGAACTCAAGATTATGGCGGGAAAACGG
GTATATCCGAATTTCTCACGAGCACCTCAACCCCTTGAAAGCTATGCATTAGAATCCTTAAATATGAAAGGCAGCATGCG
TAACAACCGTGGGCAAGTCATGGCTCTTATTCAAACACCTGATCATCAAATTGAGCGAGTACAGGTCGGGAACTATATCG
GGATGAATCAAGGTCGAATTACCCATATTGGTCCGACTCAGATTGATCTGGTGGAAATTGTCCCTGATGGACGAGAAGGC
TATGTGGAAAGACCAAGAACCTTGGTGTTGATTGGACCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

88.571

100

0.886
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714