Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   I6L27_RS13825 Genome accession   NZ_CP077232
Coordinates   2930902..2932389 (+) Length   495 a.a.
NCBI ID   WP_216967453.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1397     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2925902..2937389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L27_RS13800 (I6L27_13805) ribD 2926817..2927902 (-) 1086 WP_216967452.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  I6L27_RS13805 (I6L27_13810) nrdR 2927918..2928376 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  I6L27_RS13810 (I6L27_13815) amtB 2928540..2929934 (-) 1395 WP_081175525.1 ammonium transporter -
  I6L27_RS13815 (I6L27_13820) glnK 2929992..2930330 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  I6L27_RS13820 (I6L27_13825) - 2930609..2930836 (+) 228 WP_031947150.1 accessory factor UbiK family protein -
  I6L27_RS13825 (I6L27_13830) comM 2930902..2932389 (+) 1488 WP_216967453.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  I6L27_RS13830 (I6L27_13835) - 2932404..2933837 (-) 1434 WP_216967454.1 PLP-dependent aminotransferase family protein -
  I6L27_RS13835 (I6L27_13840) - 2933949..2934725 (+) 777 WP_125739259.1 aldolase -
  I6L27_RS13840 (I6L27_13845) - 2934742..2935620 (+) 879 WP_061874328.1 dihydrodipicolinate synthase family protein -
  I6L27_RS13845 (I6L27_13850) - 2935664..2936476 (-) 813 WP_031947143.1 TorF family putative porin -
  I6L27_RS13850 (I6L27_13855) - 2936533..2936703 (-) 171 WP_216967455.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54553.65 Da        Isoelectric Point: 7.5370

>NTDB_id=580081 I6L27_RS13825 WP_216967453.1 2930902..2932389(+) (comM) [Acinetobacter pittii strain FDAARGOS 1397]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLFPLDNGQDISHLPDLECYPVNHL
KEVCEHFLGTKSLSLIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQSCLNQALSPKQLEQFAVLDNTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLARSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=580081 I6L27_RS13825 WP_216967453.1 2930902..2932389(+) (comM) [Acinetobacter pittii strain FDAARGOS 1397]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTAAGTCA
AGGCTTGCCTTCTCTTACCATTGTCGGGCTAGCAGAAGCGGCGGTAAGAGAAAGTAAAGATCGGGTTCGCTCGGCCATTA
TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAACCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT
CTAGATTTACCGATTGCCGTAGGCATTTTAATTGCGTCTGGTCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCGCTCGATGGTCATGTAAGGCCAGTGTCAGGTACTTTAACTTTGGCAATGGCGTGTCAACAAGCCAAGC
ATAAGATGCTTTTTCCCCTTGATAATGGTCAAGATATTAGCCACTTACCGGACCTTGAATGTTATCCGGTGAACCACTTA
AAAGAAGTGTGTGAACATTTTCTGGGCACAAAATCGCTATCTTTGATTGAACCTGCAACGACTTCAAACCAAATGCCCTA
TAAATTTGATCTGGCAGATGTGAAAGGTCAGCTACGCCCACGTCGCGCACTAGAAATAGCTGCCGCAGGAGGCCATTCTC
TGCTCTTTAAAGGGCCACCAGGTACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT
CAGGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGCCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTGGTTGGGGGCGGTTCGCATCCTAAACCAGGTGAAATTACTTTATCTCATTTAG
GTGTGCTCTTTTTAGATGAACTTCCAGAGTTTGATAGAAAAGTGCTAGAAGTCTTGCGCCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACCTACCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCCTGCCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGCTCACCAGAAAGTATTAAACGCTATCAAAACCGCATATCTGGAC
CACTACTTGACCGTATCGATTTACATATTGATGTACCACCTTTAAAAGCTCAGGAACTACAAGATCCAACCCCTGCCGAA
GACTCTACAACTGTACGGCAGCGTGTGATTTATGCTTACGAACAACAAATGCAAAGACAGAGTTGTTTAAATCAAGCACT
TTCACCAAAACAACTAGAACAATTTGCTGTTTTGGATAATACGTCGCAACGCATGATTGAAATGGCTCAGCAACGCTTAA
ATCTATCGGCTCGTGCTTATCATCGTGTTTTACGGGTAGCTCGTACCATTGCCGATTTGGCTCGAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

49.699

100

0.501
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila strain ERS1305867

48.594

100

0.489
  comM Legionella pneumophila str. Paris

48.594

100

0.489
  comM Vibrio campbellii strain DS40M4

48.081

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.471