Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   I6L84_RS07985 Genome accession   NZ_CP077224
Coordinates   1621832..1622497 (-) Length   221 a.a.
NCBI ID   WP_012000103.1    Uniprot ID   A8AVW5
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1616832..1627497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS07980 (I6L84_07980) raiA 1621205..1621747 (-) 543 WP_012000104.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  I6L84_RS07985 (I6L84_07985) comFC/cflB 1621832..1622497 (-) 666 WP_012000103.1 ComF family protein Machinery gene
  I6L84_RS07990 (I6L84_07990) comFA/cflA 1622494..1623795 (-) 1302 WP_060552928.1 DEAD/DEAH box helicase Machinery gene
  I6L84_RS07995 (I6L84_07995) - 1623851..1624483 (+) 633 WP_060552929.1 YigZ family protein -
  I6L84_RS08000 (I6L84_08000) cysK 1624581..1625510 (+) 930 WP_008808600.1 cysteine synthase A -
  I6L84_RS08005 (I6L84_08005) - 1625547..1625933 (-) 387 WP_060552930.1 S1 RNA-binding domain-containing protein -
  I6L84_RS08010 (I6L84_08010) - 1625930..1627333 (-) 1404 WP_060552931.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25895.01 Da        Isoelectric Point: 8.4502

>NTDB_id=580047 I6L84_RS07985 WP_012000103.1 1621832..1622497(-) (comFC/cflB) [Streptococcus gordonii strain FDAARGOS 1454]
MKQCLICLAILEEQLNFMDLLLLKRKENDICQECLNSFEEIPEEHCPTCYKAGDKKLCKDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFALSLRKELKNFQSYTILSIPLSESKMRKRGFNQVSGLLEAAQIPYQEILKKKESQTQS
SKDRKERLENTGNFYMIENTKIPKKILLVDDIYTTGATLQDAKLTLFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=580047 I6L84_RS07985 WP_012000103.1 1621832..1622497(-) (comFC/cflB) [Streptococcus gordonii strain FDAARGOS 1454]
ATGAAACAATGTCTAATCTGCTTAGCTATATTAGAAGAGCAGTTGAATTTTATGGATTTATTACTATTAAAAAGAAAAGA
AAATGACATTTGTCAAGAGTGCTTAAATTCCTTCGAAGAAATTCCAGAAGAACATTGTCCAACCTGTTATAAAGCTGGGG
ACAAAAAATTGTGCAAAGATTGTCAGTACTGGCAGGAAAGAGGATTAGAAGTAGCACATAAAAGTTTGTACACTTATAAT
AAAGCAATGAAAGACTATTTTAGTCGCTACAAATTTCAAGGAGATTATCTTTTAAGAAATGTATTTGCCTTAAGCCTAAG
AAAAGAGTTAAAAAATTTTCAAAGCTACACAATTTTAAGCATTCCTTTAAGTGAAAGTAAGATGAGAAAAAGAGGATTCA
ATCAAGTGTCAGGATTACTTGAAGCTGCACAAATACCTTATCAAGAAATATTAAAGAAAAAAGAAAGTCAAACTCAGTCT
AGTAAAGACAGAAAAGAAAGATTAGAAAACACAGGGAATTTTTACATGATTGAAAATACGAAAATCCCGAAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGAGCAACCTTGCAAGATGCAAAATTGACATTATTTGAAAATGGAGCGAAAGAAA
TCATGACATTTTCATTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AVW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

49.772

99.095

0.493
  comFC/cflB Streptococcus mitis NCTC 12261

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae Rx1

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae D39

49.315

99.095

0.489
  comFC/cflB Streptococcus pneumoniae R6

49.315

99.095

0.489
  comFC/cflB Streptococcus mitis SK321

48.858

99.095

0.484