Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   I6L28_RS04890 Genome accession   NZ_CP077205
Coordinates   1025695..1029549 (+) Length   1284 a.a.
NCBI ID   WP_216946997.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020695..1034549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04860 (I6L28_04860) gmk 1020976..1021605 (-) 630 WP_002116973.1 guanylate kinase -
  I6L28_RS04865 (I6L28_04865) ispH 1021728..1022678 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L28_RS04870 (I6L28_04870) fimU 1022849..1023322 (+) 474 WP_216946995.1 pilus assembly FimT family protein Machinery gene
  I6L28_RS04875 (I6L28_04875) pilV 1023316..1023876 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  I6L28_RS04880 (I6L28_04880) pilW 1023876..1024877 (+) 1002 WP_216946996.1 PilW family protein Machinery gene
  I6L28_RS04885 (I6L28_04885) pilX 1024874..1025683 (+) 810 WP_057105810.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L28_RS04890 (I6L28_04890) pilY1 1025695..1029549 (+) 3855 WP_216946997.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L28_RS04895 (I6L28_04895) pilY2 1029560..1030042 (+) 483 WP_017387038.1 type IV pilin protein Machinery gene
  I6L28_RS04900 (I6L28_04900) pilE 1030039..1030464 (+) 426 WP_216946998.1 type IV pilin protein Machinery gene
  I6L28_RS04905 (I6L28_04905) rpsP 1030612..1030863 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6L28_RS04910 (I6L28_04910) rimM 1030883..1031431 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  I6L28_RS04915 (I6L28_04915) trmD 1031474..1032229 (+) 756 WP_057105812.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L28_RS04920 (I6L28_04920) rplS 1032449..1032817 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6L28_RS04925 (I6L28_04925) lip 1032870..1033811 (-) 942 WP_125698322.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 138084.52 Da        Isoelectric Point: 7.7451

>NTDB_id=579786 I6L28_RS04890 WP_216946997.1 1025695..1029549(+) (pilY1) [Acinetobacter pittii strain FDAARGOS 1398]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLALLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQILVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYTIRKDSYVKRVRKSDNRTEYSYCTNYRDSQIDTTNLWQPCRSNNYWSNWSTSNPGVDAATAYDTSSDWTY
SYTYYYTTFNYAVANADSGIPKSKTNDTTSNPNIVVDRNASNLNAIYQSPLPAVANRQSCDGQGIYFLSDGEPNNTTNTR
SATVMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQSDRKSDDNCSPNQTTNAVAAPGYGNGGFFPTQSAQGVTDSVIAFINNLDKVPLEPLTTGAISVPYDALNPKNLQEY
GYLRAFEPNPANTYLTWRGNLKKYHVVLSGTNAGAFEANTGGLVYNATGAFRTGTKDYWNSSTYNDGGKVFFGGSYAKVP
LPIAGQNETRDEEGNITKYYYAVQTKIRNLFTDVSAVASDGSLTKISTSGTNLLRIPAAPPEGTNPFDSVANTASYVLEK
FNASTGQDILKAFPISLKLKILNYLGYSTDISATTLPSSLVTSNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSAREQS
ILYGTMEGGLHIVDASTGVEQMAFVPADILNDPVASKALVVGQSDATAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKFLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGVRVVRLANLATNDSTYDSSNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSALRKNPQILRSGETRVAQIFFPNSGTGQNGWY
RSLSSMSDGTEKANNSFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTFCLPFGACLNSDGS
IDQNKENGSGFRTKTGTNCPVGASECNTNIIGSGIRGIAFVPKRDVPPVTNSCGKLQLSGNESGTGEWQCTSHLVPARWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=579786 I6L28_RS04890 WP_216946997.1 1025695..1029549(+) (pilY1) [Acinetobacter pittii strain FDAARGOS 1398]
ATGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCGGTTGCTTTTACATGGCT
AATGACAAGTTCTGTGGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCGGGTAAAAAAACCATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGTGAAAACCGTTTGGCCCTGCTTAAAAATGGTATGAATGCT
TTTTTAGCCAGCAATAATCCTGTTTTAAATGATACTCGTGTGGGCTTGGGAAATTTCTCTGCCAATGGTGATAGCCGAAG
TGGACAAATTTTGGTAGCTGCTGCTCCTTTAGGAGATGCGAGTACTTTAAATACAGTAGGTTCTCAGCGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGTGGGTCAACACCTTCAGCGCATGCTTATGCAGAAGCTGCTGCTTATTTGATG
GGTACAACAACCTATTCAGAGGCGAATTATACTATTCGAAAAGATAGCTATGTAAAGCGTGTGCGAAAATCTGATAATAG
AACGGAATACTCATATTGTACGAATTATCGCGATTCACAAATCGATACTACAAATCTATGGCAACCTTGTCGCTCTAATA
ACTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATGCGGCAACTGCTTATGATACTTCGTCGGATTGGACCTAT
TCTTATACTTATTACTACACTACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAAACAAATGA
TACGACAAGCAATCCAAATATTGTTGTAGATAGAAATGCCTCTAATTTAAATGCTATTTACCAATCTCCTTTGCCTGCGG
TGGCCAATCGCCAGAGTTGTGATGGGCAAGGAATCTACTTTTTATCAGATGGGGAGCCGAACAATACAACAAATACGCGT
TCGGCAACTGTAATGTCGACAGCCCTAGGCAGTACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTGTCTAACACGAC
AGCAGACTCTGGTTGGGCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAATCCAGCTGGAGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGT
TCGAGAACCCAATCTGATCGTAAAAGTGATGATAATTGTTCGCCGAATCAGACCACAAATGCGGTCGCTGCACCTGGTTA
TGGAAATGGAGGATTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGATAGTGTTATCGCATTTATTAATAATTTAGATA
AAGTTCCTTTAGAACCATTAACCACAGGTGCTATCTCTGTTCCTTATGATGCACTAAATCCTAAAAATTTACAGGAATAT
GGTTACTTACGTGCTTTTGAGCCAAACCCGGCTAACACCTACTTAACATGGCGAGGAAATTTAAAGAAATATCATGTTGT
TTTATCGGGAACAAATGCTGGTGCTTTTGAAGCTAATACTGGTGGGTTGGTTTACAACGCAACTGGGGCATTTAGAACGG
GTACGAAAGATTATTGGAATAGCTCTACTTATAATGATGGAGGTAAAGTCTTTTTTGGTGGTTCATATGCAAAAGTTCCT
TTACCAATTGCTGGACAAAATGAAACACGTGATGAAGAAGGAAATATCACAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCCGTTGCATCAGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGC
TAAGAATCCCTGCTGCTCCACCAGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGAAAAA
TTTAATGCATCAACCGGACAAGATATTTTAAAAGCTTTCCCAATTAGTTTGAAATTAAAAATATTAAATTATCTAGGTTA
CTCAACTGATATTAGCGCTACGACTTTACCTTCGTCATTAGTTACATCGAATGAACCCTATTTATCGATGGGCGGTAGTA
TTCATTCTTTACCGGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGCAATTTAACATCTGCGCGTGAACAATCC
ATTCTCTATGGAACGATGGAAGGTGGTCTGCATATTGTGGATGCCTCAACTGGTGTAGAACAAATGGCTTTCGTTCCCGC
TGATATATTAAATGATCCGGTTGCATCAAAAGCTTTAGTGGTTGGCCAAAGTGATGCTACAGCTCCTGCTCACGGTATGG
ATGGGGCTTGGGTATCTGACCCTGCATATAGTATTACTACAACAGGAAGCGGTAGCTCAGCAGTATCAAAAGTGACTGCA
AAGCAAATGAATATTTATGGTGGCATGCGAATGGGGGGCAGCAGCTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGTTTCTCTTTAGAGTAGGAGCAGATCAAACTGATTATAGTCGCATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGGGTGATTAAACGGGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATT
ACCTTGAGCAACTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAGCG
CTTATGGTGGACTAGTGATACAGGCTCTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCT
TAGATCGAGATGCTGATGGTTTGGTAGACCATTTATATTTTGGCGATTTAGGCGGACAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACCTATAGCAGTTTCGGTGTTCGAGTTGTTCGATTAGCCAATTTGGCAACGAATGA
TTCTACTTATGATAGCTCGAACGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCAACAGTGACAATTCACG
ATTATGGAATCCGCACTTTTATTACTGTAGGTATTGCTTCAGGTGACCGTAGTACTCCTTTAGATGTTTATCCGCTTACA
GGTCGTGAGGGGATGTCACCGAGCACGGCATTAAGCGGAAGACCTGTAAACAACGTCTATGGAATTATCGATAAAGACTT
TATTAAAAAGAACTTAATGTCTTTAACGGATAGCCAGCTTGAAACGAAAGATATTACTCGATCAGCGCTTCGAAAAAATC
CACAAATTTTACGATCTGGGGAAACACGAGTAGCACAGATTTTCTTTCCAAACTCTGGGACGGGACAAAATGGTTGGTAT
CGTTCACTTTCTAGTATGAGCGATGGTACCGAGAAAGCTAATAATAGTTTCCGTATTAAAGGAGGTCTCAAAGCTTTTGA
AGAGCCTATGGCAATTACAGGGACTTTAATTGTGCCTGTTTATGATCCACAGGGAACAGGTATTGTAGCGGCAGACCCAT
GTTTACCTCGGGTAGTAGGTGAAACTGACCAGCAGACGTTCTGTTTACCATTTGGCGCCTGCCTTAATTCTGATGGATCA
ATTGATCAGAATAAAGAGAATGGAAGTGGATTCAGAACAAAAACTGGTACTAATTGCCCAGTAGGAGCTTCTGAATGTAA
TACAAATATCATTGGCTCAGGTATTCGTGGCATAGCATTCGTTCCAAAAAGAGATGTACCTCCAGTGACTAATAGTTGTG
GGAAATTACAACTGTCTGGAAACGAGAGTGGAACGGGCGAGTGGCAATGTACAAGTCACTTAGTTCCTGCGCGCTGGTAT
GAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(715-965)

von Willebrand factor type A domain (VWA_2)

(51-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

84.729

100

0.851