Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   I6L28_RS04885 Genome accession   NZ_CP077205
Coordinates   1024874..1025683 (+) Length   269 a.a.
NCBI ID   WP_057105810.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019874..1030683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04850 (I6L28_04850) - 1020431..1020586 (-) 156 WP_014207816.1 hypothetical protein -
  I6L28_RS04855 (I6L28_04855) rpoZ 1020625..1020903 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L28_RS04860 (I6L28_04860) gmk 1020976..1021605 (-) 630 WP_002116973.1 guanylate kinase -
  I6L28_RS04865 (I6L28_04865) ispH 1021728..1022678 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L28_RS04870 (I6L28_04870) fimU 1022849..1023322 (+) 474 WP_216946995.1 pilus assembly FimT family protein Machinery gene
  I6L28_RS04875 (I6L28_04875) pilV 1023316..1023876 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  I6L28_RS04880 (I6L28_04880) pilW 1023876..1024877 (+) 1002 WP_216946996.1 PilW family protein Machinery gene
  I6L28_RS04885 (I6L28_04885) pilX 1024874..1025683 (+) 810 WP_057105810.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L28_RS04890 (I6L28_04890) pilY1 1025695..1029549 (+) 3855 WP_216946997.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L28_RS04895 (I6L28_04895) pilY2 1029560..1030042 (+) 483 WP_017387038.1 type IV pilin protein Machinery gene
  I6L28_RS04900 (I6L28_04900) pilE 1030039..1030464 (+) 426 WP_216946998.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28544.45 Da        Isoelectric Point: 7.2645

>NTDB_id=579785 I6L28_RS04885 WP_057105810.1 1024874..1025683(+) (pilX) [Acinetobacter pittii strain FDAARGOS 1398]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSMQRIRVITTAFLPAYASTSIEILQRDCLSTSSAKISDNFDTALAAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=579785 I6L28_RS04885 WP_057105810.1 1024874..1025683(+) (pilX) [Acinetobacter pittii strain FDAARGOS 1398]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTACTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTCTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACCAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAACCCCGGTGCAGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCGAGTTTACTTCGAGCAGGAAGTGCTAATAATGCAGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGAAGTAATCGCCAAGCAGTGGTTACTCAAGTTGCTGTAAGTATTCCAACAGAT
GCTGCTAGCGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTCCCTAAAAGCATGTT
GTCTATGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAATTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAGCGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911