Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   I6L28_RS04870 Genome accession   NZ_CP077205
Coordinates   1022849..1023322 (+) Length   157 a.a.
NCBI ID   WP_216946995.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1017849..1028322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04845 (I6L28_04845) spoT 1018310..1020415 (-) 2106 WP_057105808.1 RelA/SpoT family protein -
  I6L28_RS04850 (I6L28_04850) - 1020431..1020586 (-) 156 WP_014207816.1 hypothetical protein -
  I6L28_RS04855 (I6L28_04855) rpoZ 1020625..1020903 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L28_RS04860 (I6L28_04860) gmk 1020976..1021605 (-) 630 WP_002116973.1 guanylate kinase -
  I6L28_RS04865 (I6L28_04865) ispH 1021728..1022678 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L28_RS04870 (I6L28_04870) fimU 1022849..1023322 (+) 474 WP_216946995.1 pilus assembly FimT family protein Machinery gene
  I6L28_RS04875 (I6L28_04875) pilV 1023316..1023876 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  I6L28_RS04880 (I6L28_04880) pilW 1023876..1024877 (+) 1002 WP_216946996.1 PilW family protein Machinery gene
  I6L28_RS04885 (I6L28_04885) pilX 1024874..1025683 (+) 810 WP_057105810.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16794.32 Da        Isoelectric Point: 9.2843

>NTDB_id=579782 I6L28_RS04870 WP_216946995.1 1022849..1023322(+) (fimU) [Acinetobacter pittii strain FDAARGOS 1398]
MRGIIPQDGFTLVELTVTIAVMAIIAMMAAPSMSNLLESKRLDENQRDLINTLSEAKTQAILGRQDVSINLNSTASNTPT
SFNWKAASNSTLELKNIAANGTQSSSTATTLTFNANGVVTNITQDTLLSICNSKTNKKKILILTKLGTLIFKAEGTC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=579782 I6L28_RS04870 WP_216946995.1 1022849..1023322(+) (fimU) [Acinetobacter pittii strain FDAARGOS 1398]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTAGTTGAGCTTACGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCCGCGCCATCTATGTCGAATTTATTAGAAAGCAAACGATTAGATGAAAATCAACGAGACCTGATCAATACTTTGT
CGGAAGCAAAGACTCAAGCGATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCCTCAAATACACCAACT
TCTTTTAATTGGAAAGCTGCTTCCAATAGCACTCTTGAGCTTAAAAATATCGCTGCTAACGGTACACAGAGCTCATCAAC
AGCGACGACTTTAACTTTTAATGCAAATGGAGTGGTAACTAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAACAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGGGACATGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

85.987

100

0.86