Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   I6L28_RS04880 Genome accession   NZ_CP077205
Coordinates   1023876..1024877 (+) Length   333 a.a.
NCBI ID   WP_216946996.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1018876..1029877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04850 (I6L28_04850) - 1020431..1020586 (-) 156 WP_014207816.1 hypothetical protein -
  I6L28_RS04855 (I6L28_04855) rpoZ 1020625..1020903 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  I6L28_RS04860 (I6L28_04860) gmk 1020976..1021605 (-) 630 WP_002116973.1 guanylate kinase -
  I6L28_RS04865 (I6L28_04865) ispH 1021728..1022678 (+) 951 WP_016142896.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  I6L28_RS04870 (I6L28_04870) fimU 1022849..1023322 (+) 474 WP_216946995.1 pilus assembly FimT family protein Machinery gene
  I6L28_RS04875 (I6L28_04875) pilV 1023316..1023876 (+) 561 WP_079748555.1 type IV pilus modification protein PilV Machinery gene
  I6L28_RS04880 (I6L28_04880) pilW 1023876..1024877 (+) 1002 WP_216946996.1 PilW family protein Machinery gene
  I6L28_RS04885 (I6L28_04885) pilX 1024874..1025683 (+) 810 WP_057105810.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L28_RS04890 (I6L28_04890) pilY1 1025695..1029549 (+) 3855 WP_216946997.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35827.53 Da        Isoelectric Point: 6.9683

>NTDB_id=579784 I6L28_RS04880 WP_216946996.1 1023876..1024877(+) (pilW) [Acinetobacter pittii strain FDAARGOS 1398]
MAHSFVSWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTAINNNNVNFVPNVGTNTYIANTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFISP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSIVATAQPTTIAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=579784 I6L28_RS04880 WP_216946996.1 1023876..1024877(+) (pilW) [Acinetobacter pittii strain FDAARGOS 1398]
ATGGCTCACTCATTTGTATCGTGGAAACAACGGGGCTTTACATTAATTGAGCTTATGGTTGCATTGGCCTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGTCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGTCTTCTAAATTATGGGAATGTAACCAACCCAATCTTA
ACTGATACAACCCCTTGGGGCGGCGTTGTGCTAACTGGCTCAACAGCAATTAATAATAACAATGTTAATTTTGTCCCTAA
TGTTGGAACAAATACCTATATTGCTAACACATTACTCAGTCGTGGCGCAGGAGATACGGTAAGTACAGTGAGCAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCAGCTGTGCAAAGTGATCAATTGACTATCCAATTTATTTCTCCT
ACGAATATGACCAATTGTGAAGGTGTGAATGTACTTGCAGGAGATTTAATTGTAGAGCGTTATTTTTTACGTCTTGATAG
CAATGGTAGTTCACAGCAAGATTATGCACTCGCATGTGATGCAAATACTCCCTCTATTGTAGCCACAGCTCAACCGACAA
CTATTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTTCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTACTATACCATTCCCCAATACCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
CTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85