Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   I6L28_RS04895 Genome accession   NZ_CP077205
Coordinates   1029560..1030042 (+) Length   160 a.a.
NCBI ID   WP_017387038.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1024560..1035042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04885 (I6L28_04885) pilX 1024874..1025683 (+) 810 WP_057105810.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  I6L28_RS04890 (I6L28_04890) pilY1 1025695..1029549 (+) 3855 WP_216946997.1 PilC/PilY family type IV pilus protein Machinery gene
  I6L28_RS04895 (I6L28_04895) pilY2 1029560..1030042 (+) 483 WP_017387038.1 type IV pilin protein Machinery gene
  I6L28_RS04900 (I6L28_04900) pilE 1030039..1030464 (+) 426 WP_216946998.1 type IV pilin protein Machinery gene
  I6L28_RS04905 (I6L28_04905) rpsP 1030612..1030863 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  I6L28_RS04910 (I6L28_04910) rimM 1030883..1031431 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  I6L28_RS04915 (I6L28_04915) trmD 1031474..1032229 (+) 756 WP_057105812.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  I6L28_RS04920 (I6L28_04920) rplS 1032449..1032817 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  I6L28_RS04925 (I6L28_04925) lip 1032870..1033811 (-) 942 WP_125698322.1 lipase family alpha/beta hydrolase -
  I6L28_RS04930 (I6L28_04930) - 1033927..1034958 (-) 1032 WP_216946999.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17535.81 Da        Isoelectric Point: 8.4721

>NTDB_id=579787 I6L28_RS04895 WP_017387038.1 1029560..1030042(+) (pilY2) [Acinetobacter pittii strain FDAARGOS 1398]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=579787 I6L28_RS04895 WP_017387038.1 1029560..1030042(+) (pilY2) [Acinetobacter pittii strain FDAARGOS 1398]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAACTCATGGTTGTCATCGTAATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACAGCCTCTGCTGCCAAAGGCGAAATTCTAA
AATTGGCGGAACAGTTGGAACGGCATAAATCCAAGAACTTTACTTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95

100

0.95
  comE Acinetobacter baylyi ADP1

41.279

100

0.444