Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I6L28_RS04815 Genome accession   NZ_CP077205
Coordinates   1013088..1013516 (+) Length   142 a.a.
NCBI ID   WP_171429200.1    Uniprot ID   -
Organism   Acinetobacter pittii strain FDAARGOS 1398     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1008088..1018516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L28_RS04795 (I6L28_04795) - 1009474..1010361 (+) 888 WP_016143654.1 metal-dependent hydrolase -
  I6L28_RS04800 (I6L28_04800) - 1010492..1011082 (+) 591 WP_002117090.1 LemA family protein -
  I6L28_RS04805 (I6L28_04805) - 1011104..1012186 (+) 1083 WP_216946991.1 TPM domain-containing protein -
  I6L28_RS04810 (I6L28_04810) - 1012180..1012740 (+) 561 WP_216946992.1 TPM domain-containing protein -
  I6L28_RS04815 (I6L28_04815) pilA 1013088..1013516 (+) 429 WP_171429200.1 pilin Machinery gene
  I6L28_RS04820 (I6L28_04820) - 1013570..1014883 (+) 1314 WP_216946993.1 O-antigen ligase family protein -
  I6L28_RS04825 (I6L28_04825) - 1014987..1016615 (+) 1629 WP_216946994.1 PglL family O-oligosaccharyltransferase -
  I6L28_RS04830 (I6L28_04830) bfr 1016659..1017123 (-) 465 WP_016143648.1 heteropolymeric bacterioferritin subunit Bfr -
  I6L28_RS04835 (I6L28_04835) bfd 1017367..1017561 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  I6L28_RS18210 - 1017664..1017786 (+) 123 WP_408649495.1 hypothetical protein -
  I6L28_RS04840 (I6L28_04840) - 1017780..1018163 (-) 384 WP_002116996.1 RidA family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14570.64 Da        Isoelectric Point: 7.7783

>NTDB_id=579781 I6L28_RS04815 WP_171429200.1 1013088..1013516(+) (pilA) [Acinetobacter pittii strain FDAARGOS 1398]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQNYIARSQASEAFTLADGLKTTINTNLQAGTCFAGGANAATAADKVGGKY
GEAVIGGSAPSCTITYTFKSSGVSNKLTSKKIGMNVSETGILTKNSDTDAPVELLPQSFTAS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=579781 I6L28_RS04815 WP_171429200.1 1013088..1013516(+) (pilA) [Acinetobacter pittii strain FDAARGOS 1398]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCAATTGCGAT
TCCACAGTATCAAAATTATATTGCTAGATCTCAAGCATCTGAAGCATTTACTTTAGCAGATGGATTGAAAACAACGATTA
ATACTAATCTACAAGCTGGAACTTGTTTTGCAGGTGGCGCTAATGCAGCAACAGCAGCTGATAAAGTAGGTGGTAAATAT
GGGGAAGCAGTGATTGGTGGTTCAGCTCCGAGCTGTACAATTACCTACACATTTAAATCTTCAGGTGTATCAAATAAGCT
TACATCTAAAAAGATTGGAATGAATGTAAGTGAAACAGGTATCCTGACAAAAAATAGTGATACGGATGCACCAGTTGAGT
TACTTCCACAATCTTTTACAGCTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

90.141

100

0.901
  pilA Acinetobacter baumannii strain A118

44.138

100

0.451
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.411

100

0.415
  pilA Vibrio cholerae strain A1552

40.411

100

0.415
  pilA Vibrio cholerae C6706

40.411

100

0.415