NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	I6L28_RS01960	Genome accession	NZ_CP077205
Coordinates	409435..410922 (+)	Length	495 a.a.
NCBI ID	WP_216946761.1	Uniprot ID	-
Organism	Acinetobacter pittii strain FDAARGOS 1398
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 404435..415922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L28_RS01935 (I6L28_01935)	ribD	405350..406435 (-)	1086	WP_062848687.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-
I6L28_RS01940 (I6L28_01940)	nrdR	406451..406909 (-)	459	WP_000543541.1	transcriptional regulator NrdR	-
I6L28_RS01945 (I6L28_01945)	amtB	407073..408467 (-)	1395	WP_081175525.1	ammonium transporter	-
I6L28_RS01950 (I6L28_01950)	glnK	408525..408863 (-)	339	WP_000780326.1	P-II family nitrogen regulator	-
I6L28_RS01955 (I6L28_01955)	-	409142..409369 (+)	228	WP_002121136.1	accessory factor UbiK family protein	-
I6L28_RS01960 (I6L28_01960)	comM	409435..410922 (+)	1488	WP_216946761.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
I6L28_RS01965 (I6L28_01965)	-	410937..412370 (-)	1434	WP_216946762.1	PLP-dependent aminotransferase family protein	-
I6L28_RS01970 (I6L28_01970)	-	412482..413258 (+)	777	WP_016144090.1	aldolase	-
I6L28_RS01975 (I6L28_01975)	-	413274..414152 (+)	879	WP_216946763.1	dihydrodipicolinate synthase family protein	-
I6L28_RS01980 (I6L28_01980)	-	414196..415008 (-)	813	WP_213033125.1	TorF family putative porin	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54496.59 Da Isoelectric Point: 7.7217

                                >NTDB_id=579770 I6L28_RS01960 WP_216946761.1 409435..410922(+) (comM) [Acinetobacter pittii strain FDAARGOS 1398]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIAVGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLFPLDNGQDISHLPDLECYPVNHL

KEVCEHFLGTKSLSLIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSSSVRQRVIYAYKQQMQRQSCLNQALSPKQLEQFAVLDNTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=579770 I6L28_RS01960 WP_216946761.1 409435..410922(+) (comM) [Acinetobacter pittii strain FDAARGOS 1398]

ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTAAGTCA

AGGCTTGCCTTCTCTTACCATTGTCGGGCTAGCAGAAGCGGCGGTAAGAGAAAGTAAAGATCGGGTTCGCTCAGCCATTA

TTAATAGTGGATTTCAATTTCCAACTAAACGGCTGACCATTAACCTTGCACCAGCAGATTTGCCCAAAGATGGGTCACGT

CTAGATTTACCGATTGCCGTAGGCATTTTAATTGCGTCTGGTCAGCTCCCAGAAAACTGCGCCGAAGATTTTGAATTAAT

TGGTGAATTAGCGCTCGATGGTCATGTAAGGCCCGTCTCAGGTACTTTAACTTTGGCCATGGCGTGTCAACAAGCCAAGC

ATAAAATGCTTTTTCCCCTTGATAATGGTCAAGATATTAGCCACTTACCTGACCTTGAATGTTATCCAGTGAACCACTTA

AAAGAAGTGTGTGAACATTTTCTGGGCACAAAATCGCTATCATTGATTGAACCTGCAACGACTTCAAACCAAATGCCCTA

TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGCCCACGTCGCGCACTAGAAATAGCTGCCGCAGGAGGCCATTCTC

TGCTCTTTAAAGGGCCACCAGGTACAGGTAAGACTTTACTCGCTTCACGCCTTCCTTCAATTTTGCCACCGCTTTCTAAT

CAAGAAACGCTTGAAGTTGCGAGTATTTATTCCATTTCAAATACACCGCATACGTTTGGCCAGCGCCCATTTCGCGCGCC

CCACCATACAGCATCAGCGATTGCACTGGTTGGGGGCGGTTCGCATCCTAAACCAGGTGAAATTACTTTATCTCATTTAG

GTGTGCTCTTCTTAGATGAACTTCCAGAATTTGATAGAAAAGTGCTAGAAGTCTTACGTCAGCCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCAGCTCGGCAAATTACCTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGCCCATG

TGGGTATGCATTTAATCAAGACAGCCGTTGCCAATGTTCGCCTGAGAGCATTAAGCGCTATCAAAACCGCATATCTGGAC

CACTACTTGACCGTATCGATTTACATATTGATGTACCACCTTTAAAAGCTCAGGAACTACAAGATCCAACCCCTGCCGAA

GACTCCAGCAGTGTTCGACAACGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAGAGTTGTTTAAATCAAGCACT

TTCACCAAAACAACTAGAACAATTTGCTGTTTTGGATAATACGTCGCAACGCATGATTGAAATGGCTCAGCAACGTTTAA

ATCTATCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCTGATTTGGCTCAAAGTGAGATGATCCAA

AGTCCGCACCTTACAGAAGCGCTCTCCTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.403	100	0.505
comM	Glaesserella parasuis strain SC1401	49.499	100	0.499
comM	Haemophilus influenzae Rd KW20	48.898	100	0.493
comM	Legionella pneumophila strain ERS1305867	48.394	100	0.487
comM	Legionella pneumophila str. Paris	48.394	100	0.487
comM	Vibrio campbellii strain DS40M4	48.081	100	0.481
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.924	100	0.467

Detailed information NTG0579770