Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KSU12_RS05520 Genome accession   NZ_CP077108
Coordinates   1128386..1128631 (-) Length   81 a.a.
NCBI ID   WP_261788747.1    Uniprot ID   -
Organism   Fusobacterium polymorphum strain KCOM1281     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1123386..1133631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSU12_RS05500 (KSU12_05480) - 1123877..1125751 (-) 1875 WP_032887567.1 fructose-specific PTS transporter subunit EIIC -
  KSU12_RS05505 (KSU12_05485) pfkB 1125741..1126670 (-) 930 WP_032834934.1 1-phosphofructokinase -
  KSU12_RS05510 (KSU12_05490) - 1126889..1127623 (-) 735 WP_005898204.1 DeoR/GlpR family DNA-binding transcription regulator -
  KSU12_RS05515 (KSU12_05495) rpmB 1128048..1128305 (+) 258 WP_005898205.1 50S ribosomal protein L28 -
  KSU12_RS05520 rcrQ 1128386..1128631 (-) 246 WP_261788747.1 ABC transporter permease Regulator
  KSU12_RS05525 (KSU12_05500) - 1128680..1130185 (-) 1506 WP_261788746.1 ABC transporter ATP-binding protein -
  KSU12_RS05530 (KSU12_05505) - 1130197..1131936 (-) 1740 WP_032887569.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 9175.43 Da        Isoelectric Point: 4.6842

>NTDB_id=579391 KSU12_RS05520 WP_261788747.1 1128386..1128631(-) (rcrQ) [Fusobacterium polymorphum strain KCOM1281]
MILDEATSSIDTKTEKDIQAVISQLMKGRTSFVIAHRLSTIRNADLILVMKDGDIVEQGNHDELMKFDGIYANLYNTQFN
Q

Nucleotide


Download         Length: 246 bp        

>NTDB_id=579391 KSU12_RS05520 WP_261788747.1 1128386..1128631(-) (rcrQ) [Fusobacterium polymorphum strain KCOM1281]
ATGATACTAGATGAAGCTACATCAAGTATAGATACTAAAACTGAAAAAGATATACAAGCTGTTATCAGTCAACTTATGAA
AGGGAGAACAAGCTTTGTTATTGCTCATAGACTTTCAACTATTCGTAATGCAGATTTAATTTTAGTTATGAAAGATGGGG
ATATTGTTGAACAAGGTAACCATGATGAGCTTATGAAGTTTGATGGAATTTATGCTAATTTGTATAATACACAATTTAAT
CAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.37

100

0.704
  comA/nlmT Streptococcus mutans UA159

50

93.827

0.469
  comA Streptococcus mitis NCTC 12261

44.872

96.296

0.432
  comA Streptococcus gordonii str. Challis substr. CH1

44.872

96.296

0.432
  comA Streptococcus mitis SK321

43.59

96.296

0.42
  comA Streptococcus pneumoniae TIGR4

42.857

95.062

0.407
  comA Streptococcus pneumoniae Rx1

42.857

95.062

0.407
  comA Streptococcus pneumoniae D39

42.857

95.062

0.407
  comA Streptococcus pneumoniae R6

42.857

95.062

0.407