Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HU772_RS00670 Genome accession   NZ_CP077095
Coordinates   151063..152550 (-) Length   495 a.a.
NCBI ID   WP_186662004.1    Uniprot ID   A0A9E6PXJ3
Organism   Pseudomonas xantholysinigenes strain RW9S1A     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 146063..157550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU772_RS00655 (HU772_000655) - 146743..147036 (-) 294 WP_217858744.1 DUF3077 domain-containing protein -
  HU772_RS00660 (HU772_000660) - 147731..149518 (-) 1788 WP_186662002.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  HU772_RS00665 (HU772_000665) - 149757..150773 (-) 1017 WP_186662003.1 alpha/beta hydrolase -
  HU772_RS00670 (HU772_000670) comM 151063..152550 (-) 1488 WP_186662004.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HU772_RS00675 (HU772_000675) - 152751..153017 (+) 267 WP_186662005.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  HU772_RS00680 (HU772_000680) - 153027..153299 (-) 273 WP_186662006.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family -
  HU772_RS00685 (HU772_000685) - 153393..153827 (-) 435 WP_225923079.1 DUF2493 domain-containing protein -
  HU772_RS00690 (HU772_000690) mgtA 153838..156549 (-) 2712 WP_186662007.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52875.66 Da        Isoelectric Point: 8.0882

>NTDB_id=579180 HU772_RS00670 WP_186662004.1 151063..152550(-) (comM) [Pseudomonas xantholysinigenes strain RW9S1A]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVATLDDIECLGELALSGALRPVQGVLPAALAARDAGRALVVPRENAEEASLASGLVVYAMGHL
RELVAHLNGQPALSPYAANGLLLEQRPYPDLSEVQGQIAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQVQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSG
ETSASVGQKVAEARALQQRRQGCANAFLDLKGLRRHCPLESVDQAWLEQACERLTLSLRAAHRLLKVARTLADLEGAQAI
ARAHLAEALQYRPST

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=579180 HU772_RS00670 WP_186662004.1 151063..152550(-) (comM) [Pseudomonas xantholysinigenes strain RW9S1A]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGCAGGCCCCCGCCGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCACGCTCACCCTGGTCGGCCTGCCGGAAACCACGGTCAAGGAGAGCAAGGACCGGGTCCGCAGCGCCATCG
TCAACTCCGGCCTGGACTACCCGGCCCGGCGCATCACCCAGAGCCTCGCCCCCGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAATGGCCAGGTACCGGTGGCCACCCTCGACGACATCGAGTGCCT
GGGCGAACTGGCCCTGTCGGGCGCCTTGCGCCCGGTGCAGGGCGTGCTGCCCGCGGCATTGGCGGCCCGGGATGCGGGCC
GGGCGCTGGTGGTGCCACGGGAAAATGCCGAGGAAGCCAGCCTGGCCAGCGGCCTGGTGGTGTATGCGATGGGGCACCTG
CGCGAACTGGTGGCCCACCTGAACGGCCAACCCGCGCTGTCTCCCTACGCGGCCAATGGCCTGCTGCTGGAACAACGCCC
CTATCCGGACCTCAGCGAAGTCCAGGGCCAGATCGCGGCCAAGCGGGCCCTGCTGGTCGCCGCGGCCGGGGCGCATAACC
TGTTGTTCACCGGCCCGCCAGGCACCGGCAAGACCTTGCTCGCCAGCCGCTTGCCGGGGCTGCTACCGCCGCTCGACGAA
CGCGAGGCGCTGGAGGTGGCGGCGATTCGCTCGGTCAGCGGCCACGCTCCGCTCGACTGCTGGCCACAGCGACCGTTTCG
CCACCCGCACCATTCGGCCTCAGGTCCCGCGTTGGTAGGCGGCGGCAGCCGGCCGCAACCCGGCGAGATCACCCTGGCGC
ACCATGGTGTGCTGTTTCTCGACGAGCTGCCCGAGTTCGAACGGCGCGTGCTGGAGGTGCTGCGCGAACCGCTGGAGTCC
GGCGAGATCGTGGTGGCCCGAGCCAAAGACCGCGTACGCTTTCCGGCGCGTTTCCAACTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCACCGGCCGCTGCCGGTGCAGCAGCGAACAAGTCCAGCGCTACCGCAACAAGCTGT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACGGTGGCCCGGGAAAGTACCGTGCTGACCCACCAGCCCAGTGGC
GAGACCAGTGCCAGCGTTGGCCAGAAGGTGGCCGAGGCACGGGCGCTGCAGCAGCGTCGGCAGGGCTGCGCCAATGCCTT
CCTCGACCTCAAGGGGCTGCGCCGACATTGCCCGCTGGAGTCGGTGGACCAGGCCTGGCTGGAGCAGGCCTGCGAACGGC
TGACGCTGTCGTTGCGGGCAGCGCATCGGCTGCTGAAGGTGGCCCGCACGCTGGCGGACCTGGAGGGCGCGCAAGCCATC
GCCAGGGCGCACCTGGCGGAAGCGTTACAGTACCGACCCAGCACTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.09

100

0.558
  comM Glaesserella parasuis strain SC1401

54.291

100

0.549
  comM Vibrio campbellii strain DS40M4

54.747

100

0.547
  comM Vibrio cholerae strain A1552

54.343

100

0.543
  comM Legionella pneumophila str. Paris

48.79

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.79

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477