Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HU725_RS00725 Genome accession   NZ_CP077094
Coordinates   169789..171279 (-) Length   496 a.a.
NCBI ID   WP_186478333.1    Uniprot ID   -
Organism   Pseudomonas promysalinigenes strain RW10S1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 164789..176279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU725_RS00705 (HU725_000705) - 165300..165512 (+) 213 WP_060479964.1 DUF1656 domain-containing protein -
  HU725_RS00710 (HU725_000710) - 165509..166384 (+) 876 WP_060479963.1 HlyD family secretion protein -
  HU725_RS00715 (HU725_000715) - 166381..167799 (+) 1419 WP_186478331.1 efflux transporter outer membrane subunit -
  HU725_RS00720 (HU725_000720) - 167848..169635 (-) 1788 WP_186478332.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  HU725_RS00725 (HU725_000725) comM 169789..171279 (-) 1491 WP_186478333.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HU725_RS00730 (HU725_000730) - 171558..173570 (+) 2013 WP_186478334.1 DUF4034 domain-containing protein -
  HU725_RS00735 (HU725_000735) - 173590..173853 (-) 264 WP_060479960.1 accessory factor UbiK family protein -
  HU725_RS00740 (HU725_000740) glnK 174255..174593 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  HU725_RS00745 (HU725_000745) - 174642..175976 (+) 1335 WP_186478335.1 ammonium transporter -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52803.52 Da        Isoelectric Point: 7.9727

>NTDB_id=579158 HU725_RS00725 WP_186478333.1 169789..171279(-) (comM) [Pseudomonas promysalinigenes strain RW10S1]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPLPALAELECLGELALSGKLRPVQGVLPAALAARQAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPAYAANGLVLQQQPYPDLSEVQGQIAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARETTTLNHQPSG
ETSADVAAKVAEAREVQHRRQGCANAFLSLEGLRQHCPLSVTDQAWLESACERLSLSLRAAHRLLKVARTLADLHGSQSI
GKGHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=579158 HU725_RS00725 WP_186478333.1 169789..171279(-) (comM) [Pseudomonas promysalinigenes strain RW10S1]
ATGTCCCTCGCCCTCGTTCATAGCCGCGCTCAAGTCGGCGTACAAGCCCCGGCGGTCAGCGTCGAAACGCATCTAGCCAA
TGGCCTGCCCCATCTCACTCTGGTGGGCTTGCCGGAAACCACGGTCAAAGAAAGCAAAGACCGCGTACGCAGCGCGATTG
TGAACTCCGGGCTGAACTACCCGCAGCGGCGCATCACTCAGAACCTTGCACCTGCCGACTTGCCCAAGGACGGCGGGCGC
TATGACCTGGCCATCGCGTTGGGCATTCTGGCTGCCGATGGCCAGGTGCCGCTGCCAGCCCTGGCGGAGCTGGAATGCCT
GGGCGAGCTGGCCCTGTCTGGGAAGCTGCGCCCTGTGCAGGGTGTGTTGCCGGCAGCGCTGGCGGCGCGCCAGGCCGGCA
GGGCGCTGGTGGTGCCACGGGAAAACGCCGAAGAAGCCAGCCTGGCTGGCGGATTGGTGGTTTATGCCGTGGGCCACCTG
CTGGAGTTGGTGGCCCACCTCAATGGCCAGGTGCCGTTGCCAGCCTATGCCGCCAACGGCCTAGTTCTGCAACAGCAGCC
CTACCCCGACCTAAGCGAGGTCCAGGGCCAAATTGCGGCCAAGCGGGCCTTGCTGCTGGCCGCAGCCGGAGCACACAACC
TGCTCTTCACCGGCCCGCCCGGTACGGGTAAGACCTTGCTCGCCAGCCGTCTGCCTGGCCTGTTGCCTCCCCTGGACGAG
CATGAGGCACTGGAGGTGGCGGCGATTCAATCAGTCAGTGGCCACACCCCCTTGAGTAGCTGGCCGCAGCGGCCCTTTCG
CCACCCCCATCACTCAGCCTCGGGGCCTGCGTTGGTTGGCGGCGGCAGCCGGCCACAGCCTGGCGAGATCACCCTGGCGC
ACCATGGCGTGCTGTTTCTTGACGAGCTGCCGGAATTTGAGAGGCGCGTACTCGAAGTGCTGCGCGAGCCCCTGGAGTCG
GGCGAAATCGTGATTGCCAGGGCTCGCGACAAGGTGCGTTTCCCGGCGCGCTTTCAGTTGGTTGCTGCCATGAACCCCTG
CCCCTGCGGCTATTTAGGCGACCCCACTGGTCGCTGTCGCTGCAGCACCGAGCAGATTGCACGCTACCGCAACAAGCTGT
CAGGCCCGCTATTGGACCGCATCGACCTGCACCTGACCGTCGCTCGCGAAACCACTACGCTCAACCACCAGCCGAGCGGT
GAGACCAGCGCCGATGTGGCCGCCAAGGTGGCCGAGGCGAGAGAAGTGCAGCATCGGCGACAAGGCTGCGCCAATGCGTT
TCTGAGCTTGGAGGGGTTGCGGCAACATTGTCCGCTTTCAGTGACGGATCAAGCGTGGCTGGAAAGCGCCTGTGAACGGT
TGAGCCTTTCTTTACGTGCGGCGCACCGGTTGTTGAAGGTTGCCCGTACTCTGGCAGATTTGCACGGCAGCCAGTCGATC
GGCAAGGGGCACCTCGCCGAGGCATTGCAGTACAGGCCGGGGAGCAGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.6

100

0.56
  comM Vibrio cholerae strain A1552

55.96

99.798

0.558
  comM Vibrio campbellii strain DS40M4

55.96

99.798

0.558
  comM Glaesserella parasuis strain SC1401

54

100

0.544
  comM Legionella pneumophila str. Paris

49.597

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.414

100

0.47