Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HU739_RS18750 Genome accession   NZ_CP077091
Coordinates   4329191..4330684 (-) Length   497 a.a.
NCBI ID   WP_186549698.1    Uniprot ID   A0A9E6NXP2
Organism   Pseudomonas hamedanensis strain SWRI65     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4324191..4335684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU739_RS18735 (HU739_018735) - 4324702..4325622 (+) 921 WP_186549704.1 LysR substrate-binding domain-containing protein -
  HU739_RS18740 (HU739_018740) - 4325808..4327784 (+) 1977 WP_186549702.1 methyl-accepting chemotaxis protein -
  HU739_RS18745 (HU739_018745) - 4327980..4329194 (+) 1215 WP_186549700.1 aldose 1-epimerase family protein -
  HU739_RS18750 (HU739_018750) comM 4329191..4330684 (-) 1494 WP_186549698.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HU739_RS18755 (HU739_018755) - 4331005..4331283 (+) 279 WP_186549755.1 type II toxin-antitoxin system RelE/ParE family toxin -
  HU739_RS18760 (HU739_018760) - 4331291..4331596 (+) 306 WP_186549696.1 HigA family addiction module antitoxin -
  HU739_RS18765 (HU739_018765) - 4331710..4331970 (-) 261 WP_186549694.1 accessory factor UbiK family protein -
  HU739_RS18770 (HU739_018770) glnK 4332364..4332702 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  HU739_RS18775 (HU739_018775) - 4332740..4334077 (+) 1338 WP_186549692.1 ammonium transporter -
  HU739_RS18780 (HU739_018780) - 4334293..4334718 (+) 426 WP_186549690.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HU739_RS18785 (HU739_018785) sutA 4334821..4335147 (+) 327 WP_186549688.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52959.15 Da        Isoelectric Point: 8.0132

>NTDB_id=579082 HU739_RS18750 WP_186549698.1 4329191..4330684(-) (comM) [Pseudomonas hamedanensis strain SWRI65]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHAAKPYPDLNEVQGQTAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVANGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAAKP
GEDSASAAALVAEARERQHKRQGCANAFLDLPGLKRHCRLSTADEKWLESACERLILSLRSAHRLLKVARTLADLEQVDA
ITREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=579082 HU739_RS18750 WP_186549698.1 4329191..4330684(-) (comM) [Pseudomonas hamedanensis strain SWRI65]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCCCCCGCTGTCACCGTCGAAGTCCATCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTTGGCCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGATCGGGTGCGCAGCGCGATTA
TCAATTCCGGACTGCAATTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGC
TTTGATCTGGCGATTGCCTTGGGGATTCTTTCGGCGAGTGTTCAGGTGCCGTGCCTGACGCTGGATGATGTGGAGTGTCT
TGGCGAACTGGCGTTGTCCGGTGCGGTGCGGCCGGTGCGTGGCGTGCTGCCGGCAGCGTTGGCGGCGCGCAAGGCCGGGC
GGGCGTTGGTGGTGCCGCGGGCGAATGCCGAAGAGGCGTGTCTGGCTTCGGGGTTGAAGGTGTTTGCGGTGGATCACTTG
CTGGAGGCAGTGGCGCATTTCAACGGGCATACGCCGGTGGAGCCTTACGTTTCCGATGGATTGATGCATGCTGCCAAACC
CTACCCTGACCTTAACGAGGTGCAGGGGCAGACAGCCGCCAAGCGCGCATTGCTGATTGCGGCGGCGGGCGCGCACAACT
TGCTGTTCAGCGGGCCACCCGGGACAGGCAAGACGTTGCTGGCCAGCCGCCTGCCCGGATTGCTGCCGCCGCTTTCCGAA
TGCGAAGCCCTGGAGGTCGCAGCGATTCAGTCAGTCGCTAATGGCGTACCGTTAACTCACTGGCCACAGCGCCCCTTCCG
TCAACCGCACCACTCCGCTTCCGGGCCGGCACTGGTCGGCGGCAGTTCGAAACCGCAACCCGGCGAAATCACCCTGGCGC
ATCATGGCGTGCTGTTTCTCGACGAATTACCCGAGTTTGATCGCAAGGTTCTGGAGGTACTGCGCGAGCCGCTGGAGTCC
GGGCATATCGTGATTGCCCGGGCCAAGGATCGCGTGCGTTTCCCCGCGCGGTTCCAATTGGTGGCGGCAATGAATCCGTG
TCCCTGTGGATATCTTGGCGAACCCAGCGGCAAGTGTTCGTGCACGCCGGACATGGTTCAGCGCTATCGCAATAAACTGT
CGGGGCCGCTGCTGGACCGAATCGATTTGCACCTGACCGTGGCGCGAGAGGCAACAGCATTGAATCCGGCAGCGAAGCCC
GGCGAGGACAGCGCCAGCGCTGCGGCGTTGGTAGCCGAAGCGCGAGAGCGCCAGCACAAACGTCAGGGCTGCGCCAACGC
CTTTCTCGATTTGCCGGGATTGAAGCGCCATTGCCGGTTATCCACAGCCGACGAGAAATGGCTGGAATCGGCCTGCGAGC
GACTGATCCTGTCGCTGCGCTCGGCCCATCGTCTGCTCAAGGTCGCGCGCACGCTGGCGGATCTTGAGCAGGTCGATGCG
ATCACCCGCGAGCACCTGGCCGAGGCACTGCAATACCGACCGGCGACACCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Vibrio campbellii strain DS40M4

54.343

99.598

0.541
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.59

100

0.531
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.291

100

0.455