Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HU754_RS29305 Genome accession   NZ_CP077090
Coordinates   6621133..6622626 (+) Length   497 a.a.
NCBI ID   WP_186620139.1    Uniprot ID   -
Organism   Pseudomonas zeae strain OE 48.2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6616133..6627626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU754_RS29275 (HU754_029275) glnK 6617224..6617562 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  HU754_RS29280 (HU754_029280) - 6617977..6618237 (+) 261 WP_008086041.1 accessory factor UbiK family protein -
  HU754_RS29285 (HU754_029285) - 6618597..6619124 (+) 528 WP_186620137.1 Bro-N domain-containing protein -
  HU754_RS29290 (HU754_029290) - 6619119..6619388 (-) 270 WP_186620138.1 HigA family addiction module antitoxin -
  HU754_RS29295 (HU754_029295) - 6620303..6620755 (+) 453 WP_224794712.1 N-acetyltransferase -
  HU754_RS29300 (HU754_029300) - 6620790..6620960 (+) 171 WP_171057229.1 hypothetical protein -
  HU754_RS29305 (HU754_029305) comM 6621133..6622626 (+) 1494 WP_186620139.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HU754_RS29310 (HU754_029310) - 6622623..6623837 (-) 1215 WP_186620140.1 aldose 1-epimerase family protein -
  HU754_RS29315 (HU754_029315) - 6624057..6626033 (-) 1977 WP_007920409.1 methyl-accepting chemotaxis protein -
  HU754_RS29320 (HU754_029320) - 6626218..6627138 (-) 921 WP_186620141.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52896.03 Da        Isoelectric Point: 8.0488

>NTDB_id=579068 HU754_RS29305 WP_186620139.1 6621133..6622626(+) (comM) [Pseudomonas zeae strain OE 48.2]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPCLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLMHASKPYPDLNEVQGQVAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPQVKP
GEDSASAAALVAEARERQQKRQGCANAFLDLPGLKRHCKLSTADETWLESACERLTLSLRSAHRLLKVARTLADLEQVDA
IKREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=579068 HU754_RS29305 WP_186620139.1 6621133..6622626(+) (comM) [Pseudomonas zeae strain OE 48.2]
ATGTCCCTCTCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGAAGCCCCCGCTGTCACCGTCGAAGTCCATCTGGCCAA
CGGTCTGCCGTCGCTGACCATGGTCGGCCTGCCCGAGGCGGCGGTGAAGGAGAGCAAGGACCGGGTGCGCAGCGCGATCA
TCAACTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTTGATCTGGCGATTGCCTTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGTGTCTGACGCTGGACGATGTGGAATGTCT
GGGAGAGTTGGCATTGTCCGGCGCAGTAAGGGCGGTGCGCGGGGTTTTGCCGGCAGCATTGGCGGCGCGCAAGGCGGGGC
GTGCGCTGGTGGTGCCGCGAGCGAATGCCGAAGAGGCCTGCCTGGCCTCGGGGTTGAAAGTGTTTGCGGTGGATCATTTA
CTGGAGGCGGTGGCGCATTTCAATGGGCATACGCCGGTTGAACCTTATGTCTCCGACGGGCTGATGCATGCCAGCAAGCC
TTATCCCGACTTGAATGAAGTACAGGGGCAAGTGGCAGCGAAACGAGCGTTGCTGATTGCTGCTGCTGGTGCCCATAACT
TGCTGTTCAGCGGGCCGCCGGGGACGGGTAAGACATTGTTGGCGAGTCGCCTGCCGGGGCTGTTGCCGCCGCTTGCCGAG
AGTGAAGCTTTGGAGGTCGCGGCGATTCAGTCAGTCGCCAGTGGTGCACCGCTAACCCATTGGCCGCAGCGTCCCTTTCG
TCAACCTCACCACTCGGCATCCGGGCCGGCACTGGTGGGTGGCAGCTCGAAACCGCAACCCGGCGAGATTACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCC
GGGCATATCGTGATTGCCCGGGCCAAGGATCGCGTGCGTTTCCCGGCGCGATTTCAGTTGGTGGCGGCGATGAACCCGTG
TCCCTGTGGATATCTCGGCGAGCCGAGCGGCAAGTGTTCCTGCACGCCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGGATCGACTTGCACCTGACAGTGGCGCGGGAAGCGACGGCGTTGAACCCGCAGGTAAAGCCG
GGAGAAGACAGCGCCAGCGCCGCAGCACTGGTAGCCGAGGCTCGCGAACGACAGCAGAAGCGTCAGGGCTGTGCCAATGC
GTTTCTCGATCTGCCGGGATTGAAGCGGCACTGCAAGTTATCCACAGCCGATGAAACCTGGCTGGAGTCCGCCTGTGAGC
GACTGACGTTGTCGCTGCGCTCGGCCCATCGCCTGCTCAAGGTCGCCCGGACACTGGCAGACCTCGAGCAAGTCGATGCA
ATCAAACGCGAACACTTGGCCGAGGCGCTGCAATATCGGCCGGCGACACCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

50.201

100

0.503
  comM Legionella pneumophila strain ERS1305867

50.201

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.108

100

0.465