Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HU749_RS29100 Genome accession   NZ_CP077086
Coordinates   6541628..6543121 (+) Length   497 a.a.
NCBI ID   WP_014340837.1    Uniprot ID   -
Organism   Pseudomonas ogarae strain SWRI108     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6536628..6548121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU749_RS29075 (HU749_029075) - 6537045..6537470 (-) 426 WP_186649360.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HU749_RS29080 (HU749_029080) - 6537683..6539017 (-) 1335 WP_046064432.1 ammonium transporter -
  HU749_RS29085 (HU749_029085) glnK 6539051..6539389 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  HU749_RS29090 (HU749_029090) - 6539805..6540065 (+) 261 WP_018605561.1 accessory factor UbiK family protein -
  HU749_RS29095 (HU749_029095) - 6540084..6541361 (-) 1278 WP_046064433.1 sensor histidine kinase -
  HU749_RS29100 (HU749_029100) comM 6541628..6543121 (+) 1494 WP_014340837.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HU749_RS29105 (HU749_029105) - 6543128..6544342 (-) 1215 WP_014340838.1 aldose 1-epimerase family protein -
  HU749_RS29110 (HU749_029110) - 6544622..6546598 (-) 1977 WP_014340839.1 methyl-accepting chemotaxis protein -
  HU749_RS29115 (HU749_029115) - 6546784..6547704 (-) 921 WP_046064453.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53097.15 Da        Isoelectric Point: 8.0108

>NTDB_id=578981 HU749_RS29100 WP_014340837.1 6541628..6543121(+) (comM) [Pseudomonas ogarae strain SWRI108]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCIPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCCCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKRET
GDDTATVAEQVAEARERQHKRQGCANAFLDLPGLRQHCKLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQAGS
IRREHLAEALQYRPTTA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=578981 HU749_RS29100 WP_014340837.1 6541628..6543121(+) (comM) [Pseudomonas ogarae strain SWRI108]
ATGTCGCTTGCCATTGTCCACAGCCGCGCCCAAGTAGGGGTCGAGGCTCCTGCCGTTACCGTTGAAGTCCACCTGGCCAA
TGGCTTGCCGTCGCTGACGATGGTTGGCCTGCCGGAAGCGGCGGTGAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAACTTCCCGGCACGGCGCATCACCCTGAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATTGCCTTGGGGATCCTGTCGGCCAGCGTGCAGGTGCCCACCCTGACGCTGGACGACGTGGAATGCCT
CGGTGAACTGGCCTTGTCCGGCGCGGTGCGACCGGTGCGCGGGGTATTGCCTGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCATGCTGGTGGTGCCGCGGGCCAATGCCGAGGAGGCCTGCCTGGCCTCGGGGCTGAAGGTGATCGCCGTGGACCATCTG
CTCGAAGCGGTGGCGCACTTCAACGGCCACACGCCGGTCGAGCCTTTCGTTTCCAACGGGCTGCTCTCGGCCAGCAAGCC
CTACCCCGACCTGAACGAAGTACAAGGCCAGGCCGGGGCCAAGCGGGCCTTGCTGATTGCCGCCGCGGGGGCTCACAACC
TGCTGTTCAGTGGGCCACCGGGCACTGGCAAGACCCTGCTGGCGAGCCGTTTGCCAGGGCTGTTGCCACCGCTGGCCGAA
AGCGAAGCCCTGGAGGTCGCGGCCATCCAGTCGGTGGCCAGTTGCATACCGTTGAGCCACTGGCCGCAACGCCCGTTTCG
CCAGCCACACCACTCGGCTTCCGGCCCGGCGCTGGTGGGTGGCGGGTCAAAGCCGCAGCCAGGGGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGATGAGCTGCCGGAATTCGACCGCAGGGTACTGGAAGTCTTGAGAGAGCCGCTGGAGTCC
GGGCACATCGTGGTTTCTCGCGCCCGTGACCGAGTACGCTTCCCGGCGCGTTTCCAGTTGGTGGCGGCAATGAATCCCTG
CCCCTGTGGATATCTTGGCGAGCCCAGCGGCCGCTGCTGCTGTACACCGGACATGGTGCAGCGCTACCGCAACAAACTCT
CCGGGCCGCTGCTGGACCGTATCGACCTGCACTTGACCGTCGCCCGGGAAGCCACGGCGTTAAACCCCAAGCGCGAAACC
GGGGACGATACAGCCACGGTCGCCGAGCAGGTGGCCGAGGCCCGGGAGCGTCAGCACAAGCGCCAGGGCTGCGCCAACGC
CTTCCTCGATCTGCCGGGGTTGCGCCAACACTGCAAGTTATCCACAACCGATGAGACCTGGCTGGAAACCGCCTGCGAGC
GGCTGACCCTGTCATTGCGCGCCGCCCACCGCTTGCTCAAGGTCGCCCGGACGCTGGCAGACCTGGAGCAAGCGGGGAGC
ATCCGTCGCGAACACCTGGCCGAAGCGTTGCAGTATCGGCCGACTACGGCTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.354

99.598

0.551
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

53.307

100

0.535
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.833

100

0.465