Detailed information NTG0578957

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: HU749_RS03095
• Genome accession: NZ_CP077086
• Coordinates: 719696..720760 (+)
• Length: 354 a.a.
• NCBI ID: WP_079301563.1
• Uniprot ID: -
• Organism: Pseudomonas ogarae strain SWRI108
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 714696..725760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU749_RS03080 (HU749_003080)	rpmE	714966..715190 (+)	225	WP_014336159.1	50S ribosomal protein L31	-
HU749_RS03085 (HU749_003085)	-	715513..716781 (+)	1269	WP_186651186.1	malic enzyme-like NAD(P)-binding protein	-
HU749_RS03090 (HU749_003090)	-	717043..719490 (-)	2448	WP_186651188.1	penicillin-binding protein 1A	-
HU749_RS03095 (HU749_003095)	comM	719696..720760 (+)	1065	WP_079301563.1	pilus assembly protein PilM	Machinery gene
HU749_RS03100 (HU749_003100)	-	720760..721326 (+)	567	WP_186651190.1	PilN domain-containing protein	-
HU749_RS03105 (HU749_003105)	pilO	721323..721946 (+)	624	WP_095962298.1	type 4a pilus biogenesis protein PilO	-
HU749_RS03110 (HU749_003110)	-	721943..722470 (+)	528	WP_024616290.1	pilus assembly protein PilP	-
HU749_RS03115 (HU749_003115)	pilQ	722484..724571 (+)	2088	WP_079301565.1	type IV pilus secretin PilQ	Machinery gene
HU749_RS03120 (HU749_003120)	aroK	724576..725094 (+)	519	WP_003196983.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38079.65 Da
• Isoelectric Point: 4.9112

>NTDB_id=578957 HU749_RS03095 WP_079301563.1 719696..720760(+) (comM) [Pseudomonas ogarae strain SWRI108]
MLRLFNKKAHALLGIDISSTSVKLLELSRQGERYRVESYAVEPLPANAVVEKNIAELEGVGQALSRLLAKARTPLRSVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVVGVSPRSTERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLATQLAASQERLTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTP
EQAGLAKKQGGLPDDYLGEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQRLGTPTQVANP
FTNMALSSKVNAGALAGDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=578957 HU749_RS03095 WP_079301563.1 719696..720760(+) (comM) [Pseudomonas ogarae strain SWRI108]
GTGCTACGACTCTTCAATAAAAAAGCCCATGCGCTTCTGGGGATCGACATCAGTTCGACGTCGGTGAAGCTGCTCGAGTT
GAGCCGCCAGGGTGAACGCTACCGCGTCGAGTCCTACGCGGTCGAACCGTTGCCAGCCAACGCCGTGGTCGAGAAGAACA
TCGCCGAGCTCGAAGGGGTGGGCCAGGCGTTGTCGCGTCTGTTGGCCAAGGCCAGGACGCCCTTGCGTAGCGTGGCGGTG
GCCGTGGCAGGCTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGGCTGTCCGACGATGACATGGAAAACCAGCT
CAAGATCGAGGCCGATCAGTACATTCCCTATCCCCTGGATGAGGTGGCCATTGATTTCGAAGTGGTGGGTGTTTCTCCAC
GTAGTACCGAGCGCGTCGAAGTGCTGCTGGCGGCGTGCCGCAAGGAAAACGTCGAGGTCCGCGAGGCCGCGTTGGCGCTC
GCCGGGCTGACGGCCCGGGTGGTCGATGTGGAAGCTTATGCGCTGGAGCGCGCGTTCGGCCTGCTCGCCACGCAACTGGC
TGCCTCCCAGGAACGGCTGACCGTGGCGGTTGTCGACATCGGCGCCACCATGACCACCCTCAGCGTGCTGCACAACGGGC
GCATCATCTATACCCGCGAACAATTGTTCGGCGGCCGCCAGCTGACCGAGGAAATTCAGCGCCGCTATGGCCTGACACCC
GAGCAGGCCGGCTTGGCAAAGAAGCAGGGTGGCCTGCCCGACGATTATCTCGGCGAAGTGCTGCAACCTTTTCGCGAGGC
CCTGGTACAGCAGGTGTCGCGCTCCCTGCAATTCTTTTTCGCCTCGGGCCAGTACAGTGCGGTGGACCACATTCTGCTGG
CCGGGGGCACGGCTTCGGTCGCCGGCCTGGATCGGTTGATCGAGCAGCGCCTGGGCACGCCGACCCAGGTGGCTAACCCG
TTTACCAACATGGCCCTGAGCAGCAAGGTCAATGCCGGCGCCCTGGCCGGTGATGCGCCGGCACTGATGATTGCCTGTGG
GCTGGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	55.932	100	0.559
pilM	Acinetobacter baumannii D1279779	55.932	100	0.559
comM	Acinetobacter baylyi ADP1	54.52	100	0.545
pilM	Legionella pneumophila strain ERS1305867	47.175	100	0.472