Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HU749_RS03115 Genome accession   NZ_CP077086
Coordinates   722484..724571 (+) Length   695 a.a.
NCBI ID   WP_079301565.1    Uniprot ID   -
Organism   Pseudomonas ogarae strain SWRI108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 717484..729571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU749_RS03095 (HU749_003095) comM 719696..720760 (+) 1065 WP_079301563.1 pilus assembly protein PilM Machinery gene
  HU749_RS03100 (HU749_003100) - 720760..721326 (+) 567 WP_186651190.1 PilN domain-containing protein -
  HU749_RS03105 (HU749_003105) pilO 721323..721946 (+) 624 WP_095962298.1 type 4a pilus biogenesis protein PilO -
  HU749_RS03110 (HU749_003110) - 721943..722470 (+) 528 WP_024616290.1 pilus assembly protein PilP -
  HU749_RS03115 (HU749_003115) pilQ 722484..724571 (+) 2088 WP_079301565.1 type IV pilus secretin PilQ Machinery gene
  HU749_RS03120 (HU749_003120) aroK 724576..725094 (+) 519 WP_003196983.1 shikimate kinase AroK -
  HU749_RS03125 (HU749_003125) aroB 725243..726343 (+) 1101 WP_046065075.1 3-dehydroquinate synthase -
  HU749_RS03130 (HU749_003130) - 726354..727940 (+) 1587 WP_186651192.1 AAA family ATPase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 75066.07 Da        Isoelectric Point: 5.4149

>NTDB_id=578958 HU749_RS03115 WP_079301565.1 722484..724571(+) (pilQ) [Pseudomonas ogarae strain SWRI108]
MNRFFSALGISLWIALLSPMVHGASLKTLDVAALPGDRVELKLTFDGPPPTPRGYTTEQPARIALDLPGVTNQLSSKRRD
LGGGNARSATVVEAGDRTRLIIGLTQLAPYDTRVEGNNLFVVVGKGSAPKSAAPKNSAQTQRPAVASAAPARASAPVGKA
IRGVDFQRGTQGEGNVVIDLSDPSIAPDIQEREGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNASAGSDRATISIEP
SGTFDYSTYQTDNKLTVSVRPMTVDDLQKRNADRAAYSGEKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGGITLRL
QNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSA
EAKADERGTITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWSSSG
VTTGDSTTIGTPGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTE
IPYQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVNDVPPIKKNEVNAKVLVNDGETIVIGGV
FSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSDSKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=578958 HU749_RS03115 WP_079301565.1 722484..724571(+) (pilQ) [Pseudomonas ogarae strain SWRI108]
ATGAACAGGTTTTTTTCAGCCCTCGGTATTTCGCTATGGATAGCGCTGTTGTCGCCGATGGTTCATGGGGCCAGTCTGAA
GACGCTGGATGTGGCGGCGTTGCCGGGGGACCGTGTCGAGTTGAAGCTCACCTTCGATGGGCCGCCGCCGACACCCCGGG
GCTACACCACCGAACAACCGGCGCGGATTGCACTGGACCTGCCGGGCGTGACCAATCAACTTTCCAGCAAGCGCCGCGAC
CTGGGCGGGGGCAATGCACGCAGCGCCACCGTGGTCGAGGCTGGGGATCGCACCCGGTTGATCATCGGCCTTACCCAACT
GGCGCCGTATGACACCCGGGTCGAAGGGAATAACCTGTTCGTGGTGGTTGGCAAGGGCTCCGCCCCAAAGAGCGCTGCCC
CGAAGAACTCCGCCCAGACCCAGCGCCCGGCGGTTGCCAGCGCTGCGCCGGCGAGGGCCAGTGCGCCGGTGGGCAAGGCG
ATCCGTGGGGTGGACTTCCAGCGCGGGACCCAGGGCGAAGGCAACGTGGTGATCGATCTGTCTGATCCGTCCATCGCCCC
GGACATCCAGGAGCGCGAAGGCAAGATCATCCTCAATTTTGCCAGGACCCAGTTGCCAGAGCCGCTGCGGGTGCGCCTGG
ACGTCAAGGACTTCGCCACCCCGGTGCAATTCGTCAATGCCAGCGCCGGCAGCGACCGGGCGACCATCAGTATCGAACCC
AGCGGCACCTTCGACTACTCGACCTACCAGACCGACAACAAGCTCACGGTCAGCGTCCGGCCCATGACCGTCGACGACCT
GCAGAAACGCAACGCCGACCGCGCGGCCTACAGTGGCGAGAAGCTCTCACTCAACTTCCAGGACATCGAGGTGCGTTCGG
TCCTGCAACTGATTGCCGATTTTACCAACCTGAACCTCGTGGCCAGCGACACGGTGCAGGGCGGCATCACCCTGCGGCTG
CAGAATGTGCCTTGGGACCAGGCGCTTGACCTGGTACTCAAGACCAAGGGGTTGGACAAGCGCAAGGTTGGCAACGTGCT
GTTGGTGGCTCCGGCCGATGAAATTGCCGCCCGTGAGCGCCAGGAGCTGGAGTCGCAGAAGCAGATTGCCGACCTGGCGC
CGCTGCGGCGTGAGCTGTTGCAGGTCAATTATGCGAAGGCGGCGGACATCGCCAAGCTCTTCCAGTCGGTGACCAGTGCC
GAGGCAAAAGCCGATGAGCGCGGCACGATCACGGTCGATGAGCGAACCAACAACATCATTGCCTACCAGACCCAGGACCG
CCTCGACGAACTGCGCCGGATCGTGGCGCAGCTGGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATTGTCGAGG
CTAACGTCGACTACGACAAAAGCCTGGGCGTGCGCTGGGGCGGTTCGATTCAAAACAAAGGTAACTGGAGCTCCTCGGGG
GTCACCACGGGCGACTCCACCACCATCGGCACGCCGGGCAGCACCAGCACCAACCAGCCGTTCGTCGACCTGGGCGCCTC
GGGCAATACCTCGGGCATCGGCATTGCCTTCATTACCGACAACGTGTTGCTGGACCTTGAGCTGACGGCCATGGAGAAAA
CCGGCAACGGGGAAATCGTCTCCCAGCCCAAGGTAGTGACGTCCGACAAGGAGACGGCAAAGATCCTCAAGGGCACGGAA
ATCCCTTATCAGGAAGCCAGTTCCAGCGGTGCTACGTCGGTGTCGTTCAAGGAGGCTTCGCTGTCGCTGGAGGTGACCCC
GCAGATCACTCCAGACAACCGGATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCGGACTACCTGAACAAGGTGAATG
ATGTACCGCCGATCAAGAAAAACGAGGTCAATGCCAAGGTCCTGGTCAATGATGGCGAGACCATTGTGATTGGTGGGGTT
TTCTCAAATACTCAGAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCG
TGATGTGGTTTCGGATAGCAAATCCGAGCTGCTGGTGTTCCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGA
GTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-351)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-444)

AMIN domain (AMIN)

(38-122)

Bacterial type II and III secretion system protein (Secretin)

(530-686)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.093

100

0.758
  pilQ Acinetobacter baumannii strain A118

38.792

100

0.416
  pilQ Acinetobacter baumannii D1279779

38.792

100

0.416
  comQ Acinetobacter baylyi ADP1

41.151

100

0.412
  pilQ Legionella pneumophila strain ERS1305867

37.997

97.698

0.371
  pilQ Legionella pneumophila strain Lp02

37.997

97.698

0.371