Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HU759_RS29730 Genome accession   NZ_CP077082
Coordinates   6563510..6565006 (+) Length   498 a.a.
NCBI ID   WP_138452421.1    Uniprot ID   A0A5R8QX55
Organism   Pseudomonas sp. OE 28.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6558510..6570006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU759_RS29700 (HU759_029700) - 6558980..6559681 (+) 702 WP_170036730.1 HAD family hydrolase -
  HU759_RS29705 (HU759_029705) sutA 6559850..6560176 (-) 327 WP_017135899.1 transcriptional regulator SutA -
  HU759_RS29710 (HU759_029710) - 6560278..6560703 (-) 426 WP_099550273.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HU759_RS29715 (HU759_029715) - 6560913..6562253 (-) 1341 WP_017135897.1 ammonium transporter -
  HU759_RS29720 (HU759_029720) glnK 6562289..6562627 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  HU759_RS29725 (HU759_029725) - 6563049..6563312 (+) 264 WP_058421153.1 accessory factor UbiK family protein -
  HU759_RS29730 (HU759_029730) comM 6563510..6565006 (+) 1497 WP_138452421.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HU759_RS29735 (HU759_029735) - 6565189..6565767 (-) 579 WP_170036728.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  HU759_RS29740 (HU759_029740) - 6565880..6566794 (+) 915 WP_170036726.1 ABC transporter six-transmembrane domain-containing protein -
  HU759_RS29745 (HU759_029745) - 6566798..6568774 (-) 1977 WP_170036724.1 methyl-accepting chemotaxis protein -
  HU759_RS29750 (HU759_029750) - 6568942..6569862 (-) 921 WP_017135874.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53376.67 Da        Isoelectric Point: 8.2083

>NTDB_id=578878 HU759_RS29730 WP_138452421.1 6563510..6565006(+) (comM) [Pseudomonas sp. OE 28.3]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNCALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGLVPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTQHT
GDNTATASAQVAEARERQQKRQGCANAFLNLPGLREHCTLAKADEGWLESACERLTLSLRAAHRLLKVARTLADLERVEN
IARHHLQEALQYRPAAVG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=578878 HU759_RS29730 WP_138452421.1 6563510..6565006(+) (comM) [Pseudomonas sp. OE 28.3]
ATGTCCCTCGCCATCGTCCACAGCCGTGCCCAAATTGGCGTAGAAGCCCCCGCCGTTACCGTCGAAGTGCATATGGCCAA
TGGTCTTCCATCGCTTACCTTGGTGGGCCTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAACTGCGCGCTGCAATACCCGGCCCGCCGTATCACCCTCAACCTGGCGCCCGCCGACCTGCCCAAGGATGGTGGGCGT
TTTGATTTGGCGATTGCCTTGGGCATCCTGGCCGCCAGCGTGCAGGTGCCGGCATTGATGCTCGATGACGTGGAATGCCT
GGGGGAATTGGCCCTGTCCGGTGAGGTGCGGGCGGTCAAAGGTGTGCTGCCGGCCGCGCTGGCCGCACGCAAGGCCGGGC
GCACCGTGATAGTGCCGCGGGCAAATGCCGAGGAGGCGTGCCTGGCGTCGGGGTTGAAGGTGATTGCAGTGGACCACCTG
CTGCAAGTGGTGGCGCACCTGAATGGGCTGGTGCCGATTGAGCCGTATAAATCCGACGGCTTGCTGTACTTGAACAAACC
CTACCCGGACCTGAGTGAGGTGCAAGGCCAGCTTGCCGCCAAGCGCGCACTGCTGATTGCGGCTGCGGGCGCGCACAACC
TGCTGTTCAGCGGACCACCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCTGGTTTGCTGCCGCCCTTGAGTGAG
CAGGAAGCCCTGGAAGTGGCGGCCATTCAGTCAGTGGTCAGCCTGGCGCCGTTGAGCCATTGGCCGCACCGTCCGTTTCG
TCAACCGCACCATTCAGCGTCGGGGCCGGCGCTGGTGGGCGGCGGGTCAAAACCGCAGCCGGGGGAAATTACCCTGGCCC
ATCATGGCGTGCTGTTTCTGGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTGGAAGTGCTGCGCGAGCCGCTCGAATCC
GGGCATATCGTGATCTCCCGCGCCCGCGACCGGGTGAGTTTTCCGGCACGTTTTCAATTGGTGGCCGCCATGAACCCCTG
CCCTTGCGGCTATTTGGGTGAACCCAGCGGGCGCTGTCGGTGTACGCCGGAGCAGATTCAGCGTTATCGCAACAAGCTCT
CAGGGCCGTTGCTGGACCGGATCGACTTGCACCTGACCGTGGCACGGGAGACCACTGCGCTGAACCCGACCCAACACACT
GGCGATAATACGGCGACGGCTTCGGCGCAGGTGGCAGAGGCTCGAGAACGCCAGCAAAAGCGCCAGGGCTGCGCCAATGC
CTTTCTGAATCTGCCGGGGTTACGCGAGCACTGCACACTGGCAAAAGCCGATGAAGGCTGGCTGGAAAGCGCCTGCGAGC
GACTGACCTTGTCCCTGCGCGCAGCCCACCGGCTGCTCAAGGTAGCGCGCACCCTGGCGGACCTTGAGCGGGTTGAAAAC
ATTGCCCGGCATCATTTGCAGGAGGCCTTGCAGTACCGGCCTGCGGCAGTCGGCTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R8QX55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.398

0.558
  comM Glaesserella parasuis strain SC1401

55.489

100

0.558
  comM Vibrio campbellii strain DS40M4

55.758

99.398

0.554
  comM Haemophilus influenzae Rd KW20

55

100

0.552
  comM Legionella pneumophila str. Paris

51.21

99.598

0.51
  comM Legionella pneumophila strain ERS1305867

51.21

99.598

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47