Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KSS90_RS00625 Genome accession   NZ_CP077077
Coordinates   131223..132710 (-) Length   495 a.a.
NCBI ID   WP_217867842.1    Uniprot ID   -
Organism   Pseudomonas maumuensis strain COW77     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 126223..137710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS90_RS00605 (KSS90_00605) - 126749..127033 (-) 285 WP_217867838.1 hypothetical protein -
  KSS90_RS00610 (KSS90_00610) - 127728..129515 (-) 1788 WP_217867839.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KSS90_RS00615 (KSS90_00615) - 129740..130756 (-) 1017 WP_217867840.1 alpha/beta hydrolase -
  KSS90_RS00620 (KSS90_00620) - 130787..131044 (-) 258 WP_217867841.1 DUF2790 domain-containing protein -
  KSS90_RS00625 (KSS90_00625) comM 131223..132710 (-) 1488 WP_217867842.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KSS90_RS00630 (KSS90_00630) - 132907..135420 (-) 2514 WP_217867843.1 TonB-dependent receptor -
  KSS90_RS00635 (KSS90_00635) - 135502..136443 (-) 942 WP_217867844.1 FecR domain-containing protein -
  KSS90_RS00640 (KSS90_00640) - 136440..136922 (-) 483 WP_217869711.1 sigma-70 family RNA polymerase sigma factor -
  KSS90_RS00645 (KSS90_00645) - 137102..137461 (-) 360 WP_217867845.1 DUF2493 domain-containing protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52952.82 Da        Isoelectric Point: 8.2581

>NTDB_id=578722 KSS90_RS00625 WP_217867842.1 131223..132710(-) (comM) [Pseudomonas maumuensis strain COW77]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPETTVKESKDRVRSAIVNSGLDYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVAALDGIECLGELALSGALRPVQGVLPAALAARDVKRALVVPKENAEEASLASGLVVYAVGHL
RELVAHLNAQPALSPYAANGLLLEQRPYPDLSEVQGQIAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQIQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSG
ETSASVGQRVAEARELQQRRQGCANAFLDLKGLRRHCPLEPVDQAWLEQACERLTLSLRAAHRLLKVARTLADLEGTQAI
ARSHLAEALQYRPSA

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=578722 KSS90_RS00625 WP_217867842.1 131223..132710(-) (comM) [Pseudomonas maumuensis strain COW77]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTGGGGGTGCAGGCACCCGCTGTCAGCGTCGAAACCCATCTGGCCAA
CGGCCTGCCCACGCTCACCCTGGTTGGTCTGCCGGAGACCACGGTCAAGGAGAGCAAGGACCGGGTCCGCAGCGCCATCG
TCAACTCCGGGCTGGACTACCCGGCCCGGCGCATCACCCAGAGCCTCGCCCCGGCCGACCTGCCCAAGGACGGTGGCCGC
TACGACCTGGCCATCGCCCTGGGCATCCTGGCCGCCAACGGCCAAGTACCGGTTGCCGCCCTCGACGGTATCGAATGCCT
GGGCGAACTGGCGCTGTCGGGGGCGTTGCGCCCAGTGCAGGGCGTACTGCCTGCGGCACTGGCGGCGCGCGATGTGAAGC
GGGCGCTGGTGGTGCCCAAGGAAAACGCCGAAGAGGCGAGCCTGGCCAGCGGCCTGGTGGTGTACGCGGTGGGGCACCTG
CGGGAACTGGTCGCCCACCTGAATGCGCAACCGGCGCTGTCACCCTACGCCGCGAATGGCCTGCTGCTGGAGCAACGCCC
CTACCCGGACCTCAGCGAGGTGCAGGGCCAGATCGCCGCCAAGCGGGCATTGTTGGTCGCTGCCGCCGGCGCGCACAACC
TGTTGTTCTCCGGCCCACCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCCGGGCTGCTGCCGCCGCTGGACGAG
CGCGAGGCACTGGAGGTGGCGGCGATCCGCTCGGTCAGCGGCCATGCCCCGCTCGATTGCTGGCCACAGCGGCCGTTCCG
CCATCCTCACCACTCGGCCTCCGGCCCGGCGCTGGTGGGTGGTGGCAGCCGACCGCAACCCGGCGAGATCACCCTGGCGC
ACCATGGCGTGCTGTTCCTCGATGAGCTGCCCGAATTCGAACGGCGCGTGCTGGAGGTACTGCGCGAGCCGCTGGAGTCG
GGCGAGATCGTGGTGGCCCGGGCCAAGGACCGGGTGCGCTTCCCGGCGCGCTTTCAGCTGGTGGCGGCCATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCGACTGGCCGTTGCCGGTGCAGCAGCGAGCAGATCCAGCGCTACCGCAACAAGTTGT
CCGGCCCCCTGCTCGACCGCATCGACCTGCACCTGACGGTGGCCCGGGAAAGCACCGTGCTGACCCACCAGCCCAGCGGC
GAGACCAGCGCCAGTGTTGGCCAGCGGGTGGCCGAGGCACGGGAGCTGCAGCAGCGCCGCCAGGGCTGCGCCAATGCCTT
CCTCGACCTCAAGGGGCTGCGCCGGCATTGCCCGCTGGAGCCGGTCGACCAGGCCTGGCTGGAGCAGGCCTGCGAACGGC
TGACGCTGTCGTTACGGGCAGCACACCGGCTGCTGAAGGTGGCTCGCACCCTGGCGGACCTGGAGGGCACGCAAGCCATC
GCCAGGTCGCACCTGGCGGAGGCGCTGCAGTATCGGCCCAGCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.489

100

0.562
  comM Glaesserella parasuis strain SC1401

54.491

100

0.552
  comM Vibrio campbellii strain DS40M4

54.949

100

0.549
  comM Vibrio cholerae strain A1552

54.949

100

0.549
  comM Legionella pneumophila str. Paris

48.992

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.483