Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KSS93_RS02830 Genome accession   NZ_CP077075
Coordinates   645257..646744 (-) Length   495 a.a.
NCBI ID   WP_217887058.1    Uniprot ID   -
Organism   Pseudomonas xanthosomatis strain COR54     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 640257..651744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS93_RS02805 (KSS93_02805) - 641749..642741 (+) 993 WP_217887054.1 response regulator -
  KSS93_RS02810 (KSS93_02810) - 642765..643115 (+) 351 WP_217888669.1 response regulator transcription factor -
  KSS93_RS02815 (KSS93_02815) - 643248..643649 (+) 402 WP_217887055.1 DoxX family protein -
  KSS93_RS02820 (KSS93_02820) - 643772..644788 (-) 1017 WP_217887056.1 alpha/beta hydrolase -
  KSS93_RS02825 (KSS93_02825) - 644820..645065 (-) 246 WP_217887057.1 DUF2790 domain-containing protein -
  KSS93_RS02830 (KSS93_02830) comM 645257..646744 (-) 1488 WP_217887058.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KSS93_RS02835 (KSS93_02835) mgtA 647133..649823 (-) 2691 WP_217887059.1 magnesium-translocating P-type ATPase -
  KSS93_RS02840 (KSS93_02840) - 650681..650932 (-) 252 Protein_560 molybdopterin-binding protein -
  KSS93_RS02845 (KSS93_02845) - 650945..651208 (-) 264 WP_217840914.1 accessory factor UbiK family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52633.46 Da        Isoelectric Point: 7.7149

>NTDB_id=578680 KSS93_RS02830 WP_217887058.1 645257..646744(-) (comM) [Pseudomonas xanthosomatis strain COR54]
MSLALVHSRAQVGVLAPAVSVETHLANGLPALTLVGLPEATVKESKDRVRSAIVNSGLDYPARRITQNLAPADLPKDGGR
YDLAIALGILAANGQVPLATLEDIECLGELALSGALRPVQGVLPAALAARDAGRALVVPRENAEEASLAGGLVVYAVGHL
QELVAHLSGQLPLPPYAANGLLLEHRPYPDLCEVQGQAAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDSWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARARDRVRFPARFQLVAAMNPCPCGYFGDPTGRCRCSPEQIQRYRNKLSGPLLDRIDLHLTVARENTVLGNQPSG
ETSASVAKVVAAARELQQRRQGCANAFLALDGLRRHCALAPTDQAWLETACERLTLSLRAAHRLLKVARTLADLEGVEGI
TRAHLAEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=578680 KSS93_RS02830 WP_217887058.1 645257..646744(-) (comM) [Pseudomonas xanthosomatis strain COR54]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGCGTGCTGGCGCCTGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCGCACTCACCCTGGTCGGCCTGCCGGAGGCCACGGTCAAGGAATCGAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCGGGGCTGGACTACCCGGCCCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGGATACTCGCCGCCAACGGCCAGGTGCCGCTGGCCACCCTCGAAGACATCGAATGCCT
GGGCGAGCTGGCGCTGTCTGGCGCCCTGCGCCCGGTGCAGGGGGTGCTGCCCGCCGCGCTGGCCGCGCGGGATGCCGGGC
GGGCGCTGGTGGTGCCGCGGGAGAATGCCGAAGAGGCCAGCCTGGCGGGCGGGCTGGTGGTGTATGCCGTGGGGCACCTG
CAGGAACTGGTGGCTCACCTGAGCGGACAGCTGCCGTTGCCGCCCTATGCTGCCAACGGCCTGCTGCTGGAGCATCGCCC
CTACCCCGACCTGTGCGAAGTGCAGGGCCAGGCCGCCGCCAAACGCGCGCTGCTGGTGGCCGCCGCTGGCGCGCACAACC
TGTTGTTCACCGGCCCCCCAGGTACCGGCAAGACGCTACTGGCCAGCCGCTTGCCCGGCCTGCTGCCACCGCTGGACGAG
CGCGAGGCACTGGAAGTGGCGGCGATCCGCTCGGTCAGCGGCCACGCCCCGCTCGACAGCTGGCCGCAGCGGCCGTTTCG
CCATCCGCACCACTCCGCCTCGGGCCCGGCGCTGGTCGGCGGCGGCAGCCGCCCGCAACCGGGCGAAATCACGCTGGCGC
ACCACGGGGTGCTGTTTCTCGATGAGTTGCCGGAGTTCGAGCGGCGGGTACTTGAAGTACTGCGCGAGCCGCTGGAGTCG
GGCGAAATCGTGGTGGCCAGGGCCCGCGACCGGGTGCGCTTCCCGGCCCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACTTCGGCGACCCAACCGGCCGCTGCCGGTGCAGCCCGGAGCAGATCCAGCGCTACCGCAACAAACTGT
CCGGGCCACTGCTCGACCGCATCGACCTGCACCTGACCGTGGCCCGGGAGAACACCGTGCTGGGCAACCAGCCCAGCGGC
GAAACCAGCGCCAGCGTCGCCAAAGTGGTAGCTGCGGCCCGCGAGCTGCAGCAACGCCGCCAAGGCTGCGCCAATGCCTT
TCTGGCACTCGATGGCCTGCGCCGACACTGCGCCCTGGCGCCCACCGACCAGGCCTGGCTGGAGACTGCGTGCGAGCGCC
TGACCCTGTCGCTGCGGGCGGCGCACCGGTTGCTGAAGGTGGCGCGCACGCTGGCAGACCTTGAAGGGGTCGAGGGCATT
ACCCGGGCTCATCTGGCAGAGGCGTTGCAGTACCGCCCCGGATCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.6

100

0.552
  comM Vibrio campbellii strain DS40M4

54.949

100

0.549
  comM Glaesserella parasuis strain SC1401

53.877

100

0.547
  comM Vibrio cholerae strain A1552

54.343

100

0.543
  comM Legionella pneumophila str. Paris

48.992

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.992

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.117

100

0.479