Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KSS95_RS02480 Genome accession   NZ_CP077073
Coordinates   530050..531537 (+) Length   495 a.a.
NCBI ID   WP_217851368.1    Uniprot ID   -
Organism   Pseudomonas muyukensis strain COW39     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 525050..536537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS95_RS02460 (KSS95_02460) - 525267..525956 (+) 690 WP_217851355.1 ABC transporter ATP-binding protein -
  KSS95_RS02465 (KSS95_02465) - 525949..527157 (+) 1209 WP_217851357.1 ABC transporter permease -
  KSS95_RS02470 (KSS95_02470) - 527150..528628 (+) 1479 WP_217851358.1 TolC family protein -
  KSS95_RS02475 (KSS95_02475) - 528621..529874 (+) 1254 WP_217851360.1 HlyD family secretion protein -
  KSS95_RS02480 (KSS95_02480) comM 530050..531537 (+) 1488 WP_217851368.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KSS95_RS02485 (KSS95_02485) - 531864..532115 (+) 252 WP_217851370.1 DUF2790 domain-containing protein -
  KSS95_RS02490 (KSS95_02490) - 532147..533163 (+) 1017 WP_217851372.1 alpha/beta hydrolase -
  KSS95_RS02495 (KSS95_02495) - 533365..535152 (+) 1788 WP_217851373.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KSS95_RS02500 (KSS95_02500) - 535797..536081 (+) 285 WP_217851375.1 DUF3077 domain-containing protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52857.61 Da        Isoelectric Point: 7.9065

>NTDB_id=578631 KSS95_RS02480 WP_217851368.1 530050..531537(+) (comM) [Pseudomonas muyukensis strain COW39]
MSLALVHSRAQVGVQAPAVSVETHLANGLPTLTLVGLPEATVKESKDRVRSAIVNSGLEYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVASLDSIECLGELALSGALRPVQGVLPAALAARDAGRALVVPRENAEEASLAGGLMVYAVGHL
QELVAHLNEQPALAPYAANGLLLEQRPYPDLSEVQGQAAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIRSVSGHAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVARAKDRVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSEQVQRYRNKLSGPLLDRIDLHLTVARESTVLTHQPSG
ETSASVGQRVAEARALQQRRQGCANAFLDLKGLRRHCPLEPVDQAWLEQACERLTLSLRAAHRLLKVARTLADLEGAQSI
TRTHLAEALQYRPGT

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=578631 KSS95_RS02480 WP_217851368.1 530050..531537(+) (comM) [Pseudomonas muyukensis strain COW39]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTAGGGGTGCAGGCGCCCGCCGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCACCCTCACCCTGGTCGGCCTGCCGGAGGCCACGGTCAAGGAGAGCAAGGACCGGGTCCGCAGCGCCATCG
TCAACTCCGGCCTGGAATACCCGGCCCGGCGCATCACCCAAAGCCTGGCCCCAGCCGACCTGCCCAAGGATGGCGGCCGT
TACGACCTGGCCATCGCCCTGGGCATTCTCGCCGCCAATGGCCAGGTGCCGGTGGCCAGCCTCGACAGCATCGAGTGCCT
GGGCGAACTGGCCTTGTCCGGAGCCCTGCGCCCGGTGCAGGGGGTGCTGCCCGCAGCGCTTGCCGCGCGCGATGCCGGGC
GGGCGCTGGTAGTGCCGCGGGAAAACGCCGAGGAAGCCAGCCTGGCCGGCGGCCTGATGGTGTATGCGGTAGGGCATCTG
CAAGAACTGGTGGCGCACTTGAACGAGCAACCGGCCTTGGCGCCCTATGCCGCCAACGGCTTGCTGCTGGAGCAACGCCC
CTACCCTGACCTCAGCGAGGTACAAGGCCAGGCTGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCCCACAACC
TGTTGTTCACAGGGCCCCCGGGCACCGGCAAGACCCTGCTCGCCAGCCGCCTGCCTGGCCTGCTGCCGCCGCTGGACGAG
CGCGAGGCGCTGGAGGTGGCCGCCATTCGTTCGGTCAGTGGCCATGCGCCGCTGGACTGCTGGCCGCAACGGCCGTTTCG
CCACCCCCACCACTCGGCCTCCGGCCCGGCGCTGGTGGGGGGCGGTAGCCGCCCACAACCCGGTGAAATCACCCTGGCGC
ACCATGGCGTGCTGTTTCTCGATGAATTGCCCGAGTTCGAACGGCGGGTGCTGGAGGTGTTGCGCGAGCCGCTGGAGTCC
GGCGAGATCGTGGTGGCCCGGGCCAAGGACCGGGTGCGCTTCCCGGCACGCTTTCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCGACCGGGCGTTGTCGCTGCAGCAGCGAACAGGTCCAGCGCTACCGCAACAAGCTGT
CCGGGCCGCTGCTCGACCGCATCGACCTGCACCTGACGGTGGCTCGGGAAAGTACCGTGCTGACCCACCAGCCCAGTGGC
GAGACCAGCGCCAGCGTTGGCCAGAGGGTGGCCGAGGCGCGGGCGCTGCAGCAGCGCCGGCAGGGCTGCGCCAACGCCTT
CCTCGACCTCAAGGGGCTGCGTCGGCATTGCCCGCTGGAGCCGGTTGATCAGGCCTGGCTGGAGCAGGCCTGCGAACGGC
TGACACTGTCGTTGCGGGCGGCGCACCGGCTGCTGAAGGTCGCCCGCACGCTGGCGGACCTGGAGGGCGCGCAATCCATC
ACCAGGACGCACCTGGCGGAAGCGTTGCAGTACCGACCGGGCACTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

54.491

100

0.552
  comM Vibrio campbellii strain DS40M4

54.949

100

0.549
  comM Glaesserella parasuis strain SC1401

54.092

100

0.547
  comM Vibrio cholerae strain A1552

54.343

100

0.543
  comM Legionella pneumophila str. Paris

48.387

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.387

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.61

100

0.483