Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KR767_RS08275 Genome accession   NZ_CP077072
Coordinates   1843387..1844889 (+) Length   500 a.a.
NCBI ID   WP_166946177.1    Uniprot ID   -
Organism   Luteibacter anthropi strain SM7.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1838387..1849889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KR767_RS08245 (KR767_08245) hemF 1839157..1840059 (+) 903 WP_250878777.1 oxygen-dependent coproporphyrinogen oxidase -
  KR767_RS08250 (KR767_08250) - 1840181..1840837 (-) 657 WP_166946173.1 polymer-forming cytoskeletal protein -
  KR767_RS08255 (KR767_08255) gpmA 1840983..1841723 (+) 741 WP_166946175.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  KR767_RS08260 (KR767_08260) - 1841822..1842415 (+) 594 WP_250878778.1 DUF1453 domain-containing protein -
  KR767_RS08265 (KR767_08265) glnK 1842440..1842778 (-) 339 WP_166946445.1 P-II family nitrogen regulator -
  KR767_RS08270 (KR767_08270) - 1842959..1843213 (+) 255 WP_250879135.1 accessory factor UbiK family protein -
  KR767_RS08275 (KR767_08275) comM 1843387..1844889 (+) 1503 WP_166946177.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KR767_RS08280 (KR767_08280) map 1844932..1845708 (-) 777 WP_250878779.1 type I methionyl aminopeptidase -
  KR767_RS08285 (KR767_08285) - 1845705..1845914 (-) 210 WP_166946181.1 ParD-like family protein -
  KR767_RS08290 (KR767_08290) - 1846251..1848554 (+) 2304 WP_250878780.1 carbohydrate-binding protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53771.45 Da        Isoelectric Point: 6.1985

>NTDB_id=578621 KR767_RS08275 WP_166946177.1 1843387..1844889(+) (comM) [Luteibacter anthropi strain SM7.4]
MSLAVTLSRAQEGVAAPQVVVEVHLSGGLPSTSIVGLPEAAVREARDRVRVAIQNTAFEYPNRRVTVNLAPAELPKDGGR
FDLAIALGILAAGSQVPRERLDDCEFLGELALSGELRPVSGILPALIRARRSGRRIVVPRANAAEAAIIGEADVLLADSL
AEVCAWLSGQVELVPPPVSTDFYDLPQSGPDMGDIRGQHQARRALEIAAAGGHHLLLIGPPGTGKTMLAERLPGILPPMT
ESEALESCAIRSLAGEDIDPEGWRRRPFRAPHHTASGVALVGGGSCPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPL
ESGQIVISRAARQSTFPAEFQLVAAMNPCPCGYAGDPLHECRCTPDQVQRYRSRISGPLLDRIDLCVEVPRVPISALTAG
PSPMDEDSATVRRRVITAREKALLRSGQSNAELSVVNLERDCALPHAEREWLESALDKLGASARAYHRILRVARTIADLE
GGTGCVEQPHLAEALHYRRF

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=578621 KR767_RS08275 WP_166946177.1 1843387..1844889(+) (comM) [Luteibacter anthropi strain SM7.4]
ATGAGTCTCGCGGTCACCTTGTCGCGGGCGCAGGAAGGTGTTGCCGCGCCGCAGGTCGTCGTCGAGGTTCACCTGTCCGG
CGGCCTGCCCTCCACGTCCATCGTCGGCCTGCCCGAAGCGGCGGTGCGCGAGGCGCGTGACCGCGTCCGGGTCGCCATCC
AGAACACCGCCTTCGAGTATCCCAACCGCCGGGTCACCGTGAACCTCGCGCCCGCCGAGTTGCCGAAGGATGGCGGACGT
TTCGACCTCGCCATCGCCCTGGGCATCCTCGCCGCCGGCTCACAGGTGCCCCGCGAACGGCTCGACGACTGTGAATTCCT
GGGCGAGCTGGCCCTGTCCGGCGAGCTCCGCCCCGTGTCCGGCATCCTTCCCGCCCTGATCCGCGCCCGTCGCAGCGGCC
GTCGCATCGTCGTACCTCGTGCCAATGCCGCCGAGGCCGCCATCATCGGCGAGGCCGATGTACTGCTTGCCGACAGCCTT
GCCGAGGTCTGCGCCTGGCTGAGCGGGCAGGTCGAGCTGGTGCCACCACCGGTATCCACCGACTTCTACGACCTGCCGCA
GTCCGGCCCCGACATGGGCGACATCCGGGGCCAGCACCAGGCGCGCCGGGCACTGGAGATCGCCGCGGCCGGCGGCCACC
ACCTGCTTCTCATCGGCCCGCCCGGCACCGGCAAGACCATGCTGGCCGAACGCCTGCCCGGCATTCTTCCACCCATGACT
GAATCCGAGGCGCTGGAGAGCTGCGCCATCCGCTCACTGGCTGGCGAAGATATCGATCCGGAAGGCTGGCGCCGCCGTCC
CTTCCGCGCCCCGCATCACACGGCATCGGGCGTGGCACTGGTCGGCGGCGGCTCCTGCCCCCGCCCGGGCGAAATCTCGC
TGGCGCATAACGGCGTGCTGTTCCTCGACGAGCTTCCCGAGTTCTCGCGGCATGTCCTCGAAGTGCTCCGCGAGCCACTG
GAATCCGGGCAGATCGTTATCTCCCGTGCCGCGCGCCAGTCCACCTTTCCGGCGGAATTCCAGCTGGTCGCTGCAATGAA
TCCCTGCCCCTGCGGTTACGCAGGCGATCCGTTGCACGAATGCCGCTGCACGCCGGATCAGGTGCAGCGCTACCGCTCGC
GCATTTCCGGCCCGCTGCTCGATCGCATCGATCTGTGCGTGGAAGTACCGCGCGTACCCATCTCGGCCCTCACGGCCGGC
CCTTCACCCATGGACGAAGACAGCGCCACGGTGCGCCGTCGCGTCATCACGGCGCGAGAGAAGGCGCTGCTGCGTTCGGG
TCAGAGCAATGCGGAACTGAGCGTCGTGAACCTGGAGCGTGACTGCGCGTTGCCGCATGCGGAACGCGAGTGGCTTGAAT
CGGCACTCGACAAGCTGGGTGCCTCGGCACGCGCCTATCACCGCATTCTCCGTGTGGCGCGCACCATCGCCGATCTCGAA
GGCGGCACAGGGTGTGTCGAACAGCCGCATCTGGCGGAAGCGCTTCATTACCGGCGTTTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.426

99.6

0.562
  comM Vibrio campbellii strain DS40M4

54.365

100

0.548
  comM Haemophilus influenzae Rd KW20

53.663

100

0.542
  comM Glaesserella parasuis strain SC1401

52.695

100

0.528
  comM Legionella pneumophila str. Paris

51.303

99.8

0.512
  comM Legionella pneumophila strain ERS1305867

51.303

99.8

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.752

100

0.452