Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KQ252_RS08870 Genome accession   NZ_CP076801
Coordinates   1844896..1845636 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1839896..1850636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS08850 (KQ252_08835) aroB 1840438..1841520 (-) 1083 WP_045900091.1 3-dehydroquinate synthase -
  KQ252_RS08855 (KQ252_08840) aroK 1841549..1842118 (-) 570 WP_045900089.1 shikimate kinase AroK -
  KQ252_RS08860 (KQ252_08845) pilQ 1842130..1844295 (-) 2166 WP_045900087.1 type IV pilus secretin PilQ Machinery gene
  KQ252_RS08865 (KQ252_08850) pilP 1844358..1844885 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KQ252_RS08870 (KQ252_08855) pilO 1844896..1845636 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ252_RS08875 (KQ252_08860) pilN 1845633..1846274 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  KQ252_RS08880 (KQ252_08865) pilM 1846274..1847332 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  KQ252_RS08885 (KQ252_08870) ponA 1847494..1850049 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=578001 KQ252_RS08870 WP_000076101.1 1844896..1845636(-) (pilO) [Acinetobacter baumannii strain UC25604]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=578001 KQ252_RS08870 WP_000076101.1 1844896..1845636(-) (pilO) [Acinetobacter baumannii strain UC25604]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683