Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KQ252_RS08865 Genome accession   NZ_CP076801
Coordinates   1844358..1844885 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1839358..1849885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS08845 (KQ252_08830) - 1839547..1840422 (-) 876 WP_000218807.1 hypothetical protein -
  KQ252_RS08850 (KQ252_08835) aroB 1840438..1841520 (-) 1083 WP_045900091.1 3-dehydroquinate synthase -
  KQ252_RS08855 (KQ252_08840) aroK 1841549..1842118 (-) 570 WP_045900089.1 shikimate kinase AroK -
  KQ252_RS08860 (KQ252_08845) pilQ 1842130..1844295 (-) 2166 WP_045900087.1 type IV pilus secretin PilQ Machinery gene
  KQ252_RS08865 (KQ252_08850) pilP 1844358..1844885 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KQ252_RS08870 (KQ252_08855) pilO 1844896..1845636 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ252_RS08875 (KQ252_08860) pilN 1845633..1846274 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  KQ252_RS08880 (KQ252_08865) pilM 1846274..1847332 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=578000 KQ252_RS08865 WP_000695065.1 1844358..1844885(-) (pilP) [Acinetobacter baumannii strain UC25604]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=578000 KQ252_RS08865 WP_000695065.1 1844358..1844885(-) (pilP) [Acinetobacter baumannii strain UC25604]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714