Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KQ252_RS08875 Genome accession   NZ_CP076801
Coordinates   1845633..1846274 (-) Length   213 a.a.
NCBI ID   WP_000201223.1    Uniprot ID   N9LAP0
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1840633..1851274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS08855 (KQ252_08840) aroK 1841549..1842118 (-) 570 WP_045900089.1 shikimate kinase AroK -
  KQ252_RS08860 (KQ252_08845) pilQ 1842130..1844295 (-) 2166 WP_045900087.1 type IV pilus secretin PilQ Machinery gene
  KQ252_RS08865 (KQ252_08850) pilP 1844358..1844885 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KQ252_RS08870 (KQ252_08855) pilO 1844896..1845636 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ252_RS08875 (KQ252_08860) pilN 1845633..1846274 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  KQ252_RS08880 (KQ252_08865) pilM 1846274..1847332 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  KQ252_RS08885 (KQ252_08870) ponA 1847494..1850049 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  KQ252_RS08890 (KQ252_08875) - 1850067..1850891 (-) 825 WP_086222363.1 putative RNA methyltransferase -
  KQ252_RS08895 (KQ252_08880) - 1850894..1851226 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23999.36 Da        Isoelectric Point: 5.3968

>NTDB_id=578002 KQ252_RS08875 WP_000201223.1 1845633..1846274(-) (pilN) [Acinetobacter baumannii strain UC25604]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=578002 KQ252_RS08875 WP_000201223.1 1845633..1846274(-) (pilN) [Acinetobacter baumannii strain UC25604]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704