Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MQC90_RS06860 Genome accession   NZ_CP094361
Coordinates   1315464..1316600 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis strain NCIB 3610     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310464..1321600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS06840 uxaA 1310914..1312407 (+) 1494 WP_003245409.1 UxaA family hydrolase -
  MQC90_RS06845 yjnA 1312446..1313210 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  MQC90_RS06850 yjoA 1313435..1313899 (-) 465 WP_003245144.1 DinB family protein -
  MQC90_RS06855 yjoB 1314048..1315319 (+) 1272 WP_003245490.1 ATPase YjoB -
  MQC90_RS06860 rapC 1315464..1316600 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  MQC90_RS06865 phrA 1316590..1316724 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  MQC90_RS06870 yjpA 1316755..1317012 (-) 258 WP_003232731.1 YciI family protein -
  MQC90_RS06875 xlyB 1317133..1318086 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  MQC90_RS06880 yjqA 1318126..1318503 (-) 378 WP_003245254.1 PH domain-containing protein -
  MQC90_RS06885 pghB 1318609..1319211 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  MQC90_RS06890 xpdC 1319288..1320124 (+) 837 WP_003245071.1 manganese catalase family protein -
  MQC90_RS06895 xkdA 1320168..1320764 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  MQC90_RS06900 xre 1320927..1321268 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=577637 MQC90_RS06860 WP_010886491.1 1315464..1316600(+) (rapC) [Bacillus subtilis strain NCIB 3610]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=577637 MQC90_RS06860 WP_010886491.1 1315464..1316600(+) (rapC) [Bacillus subtilis strain NCIB 3610]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418